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Lsi03G011810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G011810
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationchr03:22220835..22224603
RNA-Seq ExpressionLsi03G011810
SyntenyLsi03G011810
Gene Ontology termsNA
InterPro domainsIPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018060.1 slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-0796.55Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RLKQHNGEIKGGAKATRAGRPWICAC IH
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]3.1e-08100Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RLKQHNGEIKGGAKATRAGRPWICACTIH
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
XP_004303087.1 PREDICTED: structure-specific endonuclease subunit slx1 [Fragaria vesca subsp. vesca]8.9e-0857.14Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH------DISSFKVEDTTLLVSLNQNGK
        RLKQHNGE+KGGAKA+RAGRPWICAC +H      ++ SF+ +  TL  SL +  K
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH------DISSFKVEDTTLLVSLNQNGK
XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]8.9e-0896.55Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RLKQHNGEIKGGAKAT+AGRPWICACTIH
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
XP_021617692.1 structure-specific endonuclease subunit SLX1 isoform X2 [Manihot esculenta]1.8e-0866.1Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH---DISSFKVEDT-TLLVSLNQNGKKFQGK
        RLKQHNGE+KGGAKA+RAGRPWI AC I    D S  K      LLVSLNQNGK  Q K
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH---DISSFKVEDT-TLLVSLNQNGKKFQGK
TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein1.5e-08100Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RLKQHNGEIKGGAKATRAGRPWICACTIH
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
A0A1S3CFH5 structure-specific endonuclease subunit slx14.3e-0896.55Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RLKQHNGEIKGGAKAT+AGRPWICACTIH
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
A0A6J1F1V2 structure-specific endonuclease subunit slx17.3e-0896.55Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RLKQHNGEIKGGAKATRAGRPWICAC IH
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
A0A6J1J559 structure-specific endonuclease subunit slx1 isoform X27.3e-0896.55Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RLKQHNGEIKGGAKATRAGRPWICAC IH
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X17.3e-0896.55Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RLKQHNGEIKGGAKATRAGRPWICAC IH
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
SwissProt top hitse value%identityAlignment
B6JY16 Structure-specific endonuclease subunit slx17.3e-0565.52Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH
        RL+QHNGEIKGGA  T+  RPW  AC +H
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH
Q9P7M3 Structure-specific endonuclease subunit slx12.1e-0448.78Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTIH----DISSFKVE
        RL+QHNGEI GGA  T+ GRPW  +C ++     +S+ K E
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTIH----DISSFKVE
Arabidopsis top hitse value%identityAlignment
AT5G43210.1 Excinuclease ABC, C subunit, N-terminal6.6e-0982.14Show/hide
Query:  RLKQHNGEIKGGAKATRAGRPWICACTI
        RLKQHNGEI+GGAKA+ AGRPW+CAC I
Subjt:  RLKQHNGEIKGGAKATRAGRPWICACTI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCATGCACAATTCATGATATAAGTTCATTCAAGGT
TGAAGACACTACTTTGCTTGTGAGCTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAGGAAGGAGGATGATATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGATTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCATGCACAATTCATGATATAAGTTCATTCAAGGT
TGAAGACACTACTTTGCTTGTGAGCTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATATCCTATAAGAGGAAGGAGGATGATATAGGAAAGCAAGTAGATGATCAAAC
AATAAGGTTGCTCAAGCACAGGCAAAAAGCTTTAGGGAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACAT
TTTCTTTTACAATATTTTTATATATTTATCTTCAATTCTATGATGAATTGAAATGATTGTTTATAAGATAAATATCTCATGTTTAAAATTGTGTTAAATGTAGTATTTAT
GATTTTGTTTTAATTCT
Protein sequenceShow/hide protein sequence
MRLKQHNGEIKGGAKATRAGRPWICACTIHDISSFKVEDTTLLVSLNQNGKKFQGKYPIRGRRMI