CuGenDBv2

Gene ID	Lsi03G011920
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein
Genome location	chr03:22360946..22362842
RNA-Seq Expression	Lsi03G011920
Synteny	Lsi03G011920
Gene Ontology terms	GO:0000470 - maturation of LSU-rRNA (biological process) GO:0006412 - translation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR016095 - Ribosomal protein L1, 3-layer alpha/beta-sandwich IPR023674 - Ribosomal protein L1-like IPR028364 - Ribosomal protein L1/ribosomal biogenesis protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048392.1 50S ribosomal protein L1 [Cucumis melo var. makuwa]

1.1e-56

97.41

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIR+MLDFKLPSSA
Subjt:  RLNIREMLDFKLPSSA

XP_022152718.1 LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica charantia]

5.0e-57

97.41

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKS+ETNKPSGAKGVYWKS HICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIREMLDFKLPSSA
Subjt:  RLNIREMLDFKLPSSA

XP_022948661.1 50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]

1.1e-56

95.69

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIREMLDFKLPS+A
Subjt:  RLNIREMLDFKLPSSA

XP_023525415.1 50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.1e-56

95.69

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIREMLDFKLPS+A
Subjt:  RLNIREMLDFKLPSSA

XP_038905945.1 50S ribosomal protein L1, chloroplastic-like [Benincasa hispida]

1.3e-57

99.14

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIREMLDFKLPSSA
Subjt:  RLNIREMLDFKLPSSA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFH3 Ribosomal protein

5.4e-57

97.41

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIR+MLDFKLPSSA
Subjt:  RLNIREMLDFKLPSSA

A0A5A7TXX7 Ribosomal protein

5.4e-57

97.41

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIR+MLDFKLPSSA
Subjt:  RLNIREMLDFKLPSSA

A0A5D3BLK6 Ribosomal protein

5.4e-57

97.41

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIR+MLDFKLPSSA
Subjt:  RLNIREMLDFKLPSSA

A0A6J1DFM3 Ribosomal protein

2.4e-57

97.41

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKS+ETNKPSGAKGVYWKS HICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIREMLDFKLPSSA
Subjt:  RLNIREMLDFKLPSSA

A0A6J1G9U2 Ribosomal protein

5.4e-57

95.69

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        RLNIREMLDFKLPS+A
Subjt:  RLNIREMLDFKLPSSA

SwissProt top hits

e value

%identity

Alignment

Q3MA18 50S ribosomal protein L1

2.3e-36

60.34

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        QVA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS EDLL+NL A  ++I+ N+PSGAKG YW++ ++ ++MGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        R++I  + D+KL  +A
Subjt:  RLNIREMLDFKLPSSA

Q8DM27 50S ribosomal protein L1

7.8e-37

61.21

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        QVA +G++LGPRGLMP+PKAGTV  +LPQAI EFK GKVE+RAD++GIVH+ FGKA FS EDLL+NL A  +SI+ N+PSGAKG YW+S ++ ++MGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        +++I  + + KL  +A
Subjt:  RLNIREMLDFKLPSSA

Q8YLJ7 50S ribosomal protein L1

2.9e-36

60.34

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        QVA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS EDLL+NL A  ++I+ N+PSGAKG YW++ ++ ++MGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSSA
        R++I  + D+KL  +A
Subjt:  RLNIREMLDFKLPSSA

Q9LE95 50S ribosomal protein L1, chloroplastic

6.8e-49

77.78

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Query:  SQVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPS
        ++VASLG++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F EEDLLINL A IKS+ETNKP+GAKGVYWKSAHI SSMGPS
Subjt:  SQVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPS

Query:  IRLNIREMLDFKLPSSA
        IRLNIREMLD+K PS+A
Subjt:  IRLNIREMLDFKLPSSA

Q9LY66 50S ribosomal protein L1, chloroplastic

1.1e-51

80.87

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+EEDLLIN LAA+KS+ETNKP GAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSS
        +LNIREM+DFK P++
Subjt:  RLNIREMLDFKLPSS

Arabidopsis top hits

e value

%identity

Alignment

AT2G42710.1 Ribosomal protein L1p/L10e family

1.2e-16

36.61

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGV-----YWKSAHICSS
        +V  + ++L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK  FSEE L  N+ A + ++   KP+G K       Y  + H+CS+
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGV-----YWKSAHICSS

Query:  MGPSIRLNIREM
        MG    ++I+ +
Subjt:  MGPSIRLNIREM

AT3G63490.1 Ribosomal protein L1p/L10e family

7.9e-53

80.87

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI
        +VA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+EEDLLIN LAA+KS+ETNKP GAKGVYWKSAHICSSMGPSI
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSI

Query:  RLNIREMLDFKLPSS
        +LNIREM+DFK P++
Subjt:  RLNIREMLDFKLPSS

AT3G63490.2 Ribosomal protein L1p/L10e family

2.4e-09

52.73

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Query:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK
        +VA LGK+LGPRGLMPNPKAGTV  N+PQ+    ++GK+     K G+     GK
Subjt:  QVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK

Sequences

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CDS sequence

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mRNA sequence

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ATGGATCGTTCCCAATTTCAGTCCGTGGCACCAAATTTGACCCATTTCTTAAAATTGACGAAGTCTCTGTATGCAAAGTGTTATCTGGTCCTCGTTGATGACAATATAGT
TGATTCCCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGACTCATGCCGAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGCAATAGCAGAATTCA
AGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCACTTACCATTTGGAAAAGCTGACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATA
AAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGAGATGCT
GGACTTCAAACTTCCCTCAAGCGCTTGACGAATAACAGACCTGTACATTCCTTCTGTTTGTTGAATCAGCCTCTGGGGAATCCACTGGAATATAATGATGCCCAAATGTG
AGCAGCACTGGAAACAAGATGATTGAAGAAACTAGGAAAAAGAGTGAGGAGACATCAGATAATTATGATTACACAGCAACAAGCATACTGCATAGTCTTCTATACTGACT
GACTTTGTATTAATGGTGTTAAGTTCTTATTGATCTACCACACTTTGATTGACCTCTTGGGTTTTAAGGGGGAAAAATGATAAATGTACTGAATTGTATTGACCAGTTGC
TGCTCATTTATATAGCACATTTCGAAAGTGGTTGTTCTTGTTGATTCGTCGTAAAGGGTCATTTGGTATGCAAATACAGTTCTATCGATGTAAGTTACTTAATTTCATAT
TTTGACATGCAAATCTGGATGATATACGGGATCAAGCTCCAAATTCTATTCTTGTTTAGGGGCTTTCATTATGTAATCATGGACTCAAGTCTTTCTAGTTTCTGATCAAT
CATATTCTCGAGCTTCTGTTTTGAGC

Protein sequence

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MDRSQFQSVAPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAI
KSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA

Lsi03G011920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome