; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G011940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G011940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA polymerase sigma factor sigD
Genome locationchr03:22362845..22367051
RNA-Seq ExpressionLsi03G011940
SyntenyLsi03G011940
Gene Ontology termsGO:0071482 - cellular response to light stimulus (biological process)
GO:2000142 - regulation of DNA-templated transcription, initiation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0016987 - sigma factor activity (molecular function)
InterPro domainsIPR000943 - RNA polymerase sigma-70
IPR007624 - RNA polymerase sigma-70 region 3
IPR007627 - RNA polymerase sigma-70 region 2
IPR007630 - RNA polymerase sigma-70 region 4
IPR013324 - RNA polymerase sigma factor, region 3/4-like
IPR013325 - RNA polymerase sigma factor, region 2
IPR014284 - RNA polymerase sigma-70 like domain
IPR036388 - Winged helix-like DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048391.1 RNA polymerase sigma factor sigD [Cucumis melo var. makuwa]5.3e-20292.54Show/hide
Query:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        GPNFIS DTLTLPPPPEAAVLAVEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSGPLRPGYLSPKEEAE
Subjt:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEA  LEK K+RIMETQEHEPTNKQLAIA+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+R
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQAIIRALDKKSRLVRLPGHMGQMV+RIAE NNHLGIKLSRPPT++EVAESLKV VSTVRLV ERSKRPISINQP+NDR CLTLQEI+
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRE+IRRINI TLSKLKKT +LDY+KDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

XP_004149725.1 RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus]1.2e-20192.03Show/hide
Query:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        GPN ISNDTLTLPPPPEAAVLAVEAA EHVLVEA+GFSEDWS KN+E+MEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSGPLRPGYLSPKEEAE
Subjt:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEA  LE  KTRIMETQEHEPTNKQLAIA+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQAIIRALDKKSRLVRLPGHMGQMV+RIAE NNHLGIKLSRPPT+KEVAESLKVH+ST+RLV ERSKRPISINQP+NDR CLTLQEIM
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMVMRKLMKQELKRLLNTLSKREA ILSLYFGLNGEIPQSFEEIGKSLNLSRE+IR+ NI TLSKLKKT +LDYLKDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

XP_008461821.1 PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo]5.3e-20292.54Show/hide
Query:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        GPNFIS DTLTLPPPPEAAVLAVEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSGPLRPGYLSPKEEAE
Subjt:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEA  LEK K+RIMETQEHEPTNKQLAIA+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+R
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQAIIRALDKKSRLVRLPGHMGQMV+RIAE NNHLGIKLSRPPT++EVAESLKV VSTVRLV ERSKRPISINQP+NDR CLTLQEI+
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRE+IRRINI TLSKLKKT +LDY+KDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

XP_022982740.1 RNA polymerase sigma factor sigD, chloroplastic [Cucurbita maxima]5.0e-19288.43Show/hide
Query:  PNFISNDTLTLPPPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        PNFISNDTLT PPP E AAVLAVEAAREHVLVEA   S+DW CKNLE+ME+SCGGDG VAWKK+RRKRRKEVG  AEENWVALSSGPLRPG+LS KEEAE
Subjt:  PNFISNDTLTLPPPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEAAQ+EK KTRIMETQ+HEPTNKQLAIA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKGAERFEPNR
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQ II+ALDKKSRLVRLPGHMGQMV+RIAEANNHLGIKLSR PTHKEVA+ LKV VSTVRLVTERSKRPISIN+P+NDRGCLTLQEIM
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMV+RKLMKQELKRLL+TLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRE+IR+ NI TL+KLKK+ ILDYLKDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

XP_038906215.1 RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida]1.4e-20794.09Show/hide
Query:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        G NFI+NDTLTLPPPPEAAVL VEAAREHVLV+ARGFSEDWSCKNLERME SCGGDGTVAWKKKRRKRRKEVG+KAEENW ALSSGPLRPGYLSPKEEAE
Subjt:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEAAQLE+AKTRIMETQEHEPTN+QLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQAIIRALDKKSRLVRLPGHMGQMV+RIAEANNHLG+KLSRPPTHKEVAESLKV VSTVRLVTERSKRPISINQP+NDRGCLTLQEIM
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMVMRKLMKQE+KRLLNTLSKREAHILSLYFGLNGEIP+SFEEIGKSLNLSRE+IR+IN+ TLSKLK T ILDYLK+YLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

TrEMBL top hitse value%identityAlignment
A0A0A0L9T0 Uncharacterized protein5.7e-20292.03Show/hide
Query:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        GPN ISNDTLTLPPPPEAAVLAVEAA EHVLVEA+GFSEDWS KN+E+MEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSGPLRPGYLSPKEEAE
Subjt:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEA  LE  KTRIMETQEHEPTNKQLAIA+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQAIIRALDKKSRLVRLPGHMGQMV+RIAE NNHLGIKLSRPPT+KEVAESLKVH+ST+RLV ERSKRPISINQP+NDR CLTLQEIM
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMVMRKLMKQELKRLLNTLSKREA ILSLYFGLNGEIPQSFEEIGKSLNLSRE+IR+ NI TLSKLKKT +LDYLKDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

A0A1S3CFL7 RNA polymerase sigma factor sigD, chloroplastic2.6e-20292.54Show/hide
Query:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        GPNFIS DTLTLPPPPEAAVLAVEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSGPLRPGYLSPKEEAE
Subjt:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEA  LEK K+RIMETQEHEPTNKQLAIA+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+R
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQAIIRALDKKSRLVRLPGHMGQMV+RIAE NNHLGIKLSRPPT++EVAESLKV VSTVRLV ERSKRPISINQP+NDR CLTLQEI+
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRE+IRRINI TLSKLKKT +LDY+KDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

A0A5D3BP27 RNA polymerase sigma factor sigD2.6e-20292.54Show/hide
Query:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        GPNFIS DTLTLPPPPEAAVLAVEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSGPLRPGYLSPKEEAE
Subjt:  GPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEA  LEK K+RIMETQEHEPTNKQLAIA+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+R
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQAIIRALDKKSRLVRLPGHMGQMV+RIAE NNHLGIKLSRPPT++EVAESLKV VSTVRLV ERSKRPISINQP+NDR CLTLQEI+
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRE+IRRINI TLSKLKKT +LDY+KDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

A0A6J1FAN3 RNA polymerase sigma factor sigD, chloroplastic1.6e-19187.92Show/hide
Query:  PNFISNDTLTLPPPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        PNFI+NDTLT PPP E AAVLAVEAAREHVLVEA   S+DWSCKNLE+ME+SCGG G VAWKK+RRKRRKEVG  AEENWVALS+GPLRPG+LS KEEAE
Subjt:  PNFISNDTLTLPPPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEAAQ+EK KTRIMETQEHEPTNKQLAIA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKGAERFEPNR
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQ II+ALDKKSRLVRLPGHMGQMV++IAEANNHLGIKLSR PTHKEVA+ LKV VSTVRLVTER+KRPISINQP+NDRGCLTLQEIM
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMV+RKLMKQELK+LLNTLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRE+IR+ NI TL+KLKK+ ILDYLKDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

A0A6J1J3P0 RNA polymerase sigma factor sigD, chloroplastic2.4e-19288.43Show/hide
Query:  PNFISNDTLTLPPPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE
        PNFISNDTLT PPP E AAVLAVEAAREHVLVEA   S+DW CKNLE+ME+SCGGDG VAWKK+RRKRRKEVG  AEENWVALSSGPLRPG+LS KEEAE
Subjt:  PNFISNDTLTLPPPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAE

Query:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR
        LCLCLKEAAQ+EK KTRIMETQ+HEPTNKQLAIA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKGAERFEPNR
Subjt:  LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNR

Query:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM
        GHKLSTY YWWIRQ II+ALDKKSRLVRLPGHMGQMV+RIAEANNHLGIKLSR PTHKEVA+ LKV VSTVRLVTERSKRPISIN+P+NDRGCLTLQEIM
Subjt:  GHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIM

Query:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
        PGPDNLTPENMV+RKLMKQELKRLL+TLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRE+IR+ NI TL+KLKK+ ILDYLKDYLV
Subjt:  PGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

SwissProt top hitse value%identityAlignment
O22056 RNA polymerase sigma factor sigB1.2e-4732.08Show/hide
Query:  KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSID
        K LE+         T +  KK+R   +EV       ++ +++   +   L+ +EE EL   +++  +LE+ +T + E    +PT  Q A A G    S+ 
Subjt:  KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSID

Query:  RILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEA
        + +      +D++I+   +LVISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STY +WWI+QA+ ++L  +SR++RLP HM +   R+ EA
Subjt:  RILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEA

Query:  NNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLN
           L  +  + P ++E+AE+  + +  +  V    K P S++Q I     L   E++  P+ +T E++++++ M+Q+L ++L++L  RE  ++   FG+ 
Subjt:  NNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLN

Query:  GEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
            ++ +EIG+ + +SRE +R+I  +   KLK     ++L+ YLV
Subjt:  GEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

P26683 RNA polymerase sigma factor SigA1.7e-4933.04Show/hide
Query:  EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRA
        +E     G  A  ++R + +K+   +          G +R   L   EE EL   + +  +LE+ + R+ E  E +P + + A A+   L +    L   
Subjt:  EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRA

Query:  RESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGI
        R ++D++++   +LV+SIA  Y  +GLS QDL QEG++GL++ AE+F+  +G+K STY  WWIRQAI RA+  +SR +RLP H+ + +SRI +    L  
Subjt:  RESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGI

Query:  KLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQS
        ++ R PT +E+A  +++ +  +R + + ++ PIS+  PI       L + +   D  TPE+ V + L++++L+++L++LS RE  +L L +GL+    ++
Subjt:  KLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQS

Query:  FEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYL
         EEIG+  N++RE IR+I    L KL+       LK+Y+
Subjt:  FEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYL

P38023 RNA polymerase sigma factor SigA12.0e-5034.41Show/hide
Query:  EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPL-RPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCR
        E+S G D   A K K + R+        E+ + L    + R   L   EE EL   + +   LE+ +  ++E  +  P++ + A A+ + L    R L R
Subjt:  EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPL-RPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCR

Query:  ARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLG
         R ++D++++   +LV+SIA  Y  +GLS QDL QEG++GL++ AE+F+  +G+K STY  WWIRQAI RA+  +SR +RLP H+ + +SRI +    L 
Subjt:  ARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLG

Query:  IKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQ
         ++ R PT +E+A  +++ +  +R + + ++ PIS+  PI       L + +   D  TPE+ V + L++++L+ +L+TLS RE  +L L +GL+    +
Subjt:  IKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQ

Query:  SFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYL
        + EEIG+  N++RE IR+I    L KL+       LK+Y+
Subjt:  SFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYL

P74565 RNA polymerase sigma factor SigA1.3e-4634.67Show/hide
Query:  KEAAQLEKAKTRIMETQEHEPTNKQLAIALGT-----------------KLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIG
        K+  +LE AK R++  ++ EP  K +   L                      +  R L   R ++D++++   +LV+SIA  Y  +GLS QDL QEG++G
Subjt:  KEAAQLEKAKTRIMETQEHEPTNKQLAIALGT-----------------KLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIG

Query:  LLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPI
        L++ AE+F+  +G+K STY  WWIRQAI RA+  +SR +RLP H+ + +SRI +    L  ++ R PT +E+AE +++ +  +R + + ++ PIS+  PI
Subjt:  LLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPI

Query:  NDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYL
               L + +   D  TPE+ V + L++++L+ +L+TLS RE  +L L +GL+    ++ EEIG+  N++RE IR+I    L KL+       LK+Y+
Subjt:  NDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYL

Q9ZSL6 RNA polymerase sigma factor sigD, chloroplastic1.0e-8650.14Show/hide
Query:  GTVAWKKKRRKRRKEV-------------GVKAEENWVALS-SGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSI
        G  + K+++R+RR+ V             GV+AE   +++   G  R G+LS  EE +LCL LKE A+LE   T +   +E+E  +  LA   G K  S 
Subjt:  GTVAWKKKRRKRRKEV-------------GVKAEENWVALS-SGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSI

Query:  DRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAE
        + ILCR +E+R+++ RCY +LV+SIA  YQGKGL+LQDL QEG+IGLL+GAERF+P+RG+KLSTY YWWI+QAI+RA+  KSRLV+LPG M ++ +++AE
Subjt:  DRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAE

Query:  ANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGL
        A+N L  KL R P+ +E+AE L ++VS VRL  ERS+ P+S+++  +  G +TLQEI+ GPD   PE MV R+ MK E+++LL +L+ RE+ +L LYFGL
Subjt:  ANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGL

Query:  NGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDY
        NGE P SFEEIGKSL LSRE +R+IN   L KL+    ++ LK Y
Subjt:  NGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDY

Arabidopsis top hitse value%identityAlignment
AT1G08540.1 RNApolymerase sigma subunit 28.5e-4932.08Show/hide
Query:  KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSID
        K LE+         T +  KK+R   +EV       ++ +++   +   L+ +EE EL   +++  +LE+ +T + E    +PT  Q A A G    S+ 
Subjt:  KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSID

Query:  RILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEA
        + +      +D++I+   +LVISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STY +WWI+QA+ ++L  +SR++RLP HM +   R+ EA
Subjt:  RILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEA

Query:  NNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLN
           L  +  + P ++E+AE+  + +  +  V    K P S++Q I     L   E++  P+ +T E++++++ M+Q+L ++L++L  RE  ++   FG+ 
Subjt:  NNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLN

Query:  GEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV
            ++ +EIG+ + +SRE +R+I  +   KLK     ++L+ YLV
Subjt:  GEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV

AT1G64860.1 sigma factor A6.3e-3630Show/hide
Query:  VLVEARGFSEDWSCKNLERMEESCGGDGTVAWKK-------KRRKRRKEVGVKAEENWV------ALSSGPLRPGY---------LSPKEEAELCLCLKE
        +L++     + W+    + +     G GT+  KK           R++ +G K + N         +SSG    GY         LS  E   L   +K 
Subjt:  VLVEARGFSEDWSCKNLERMEESCGGDGTVAWKK-------KRRKRRKEVGVKAEENWV------ALSSGPLRPGY---------LSPKEEAELCLCLKE

Query:  AAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTY
          +L+  K+R+ +    EP+++QLA++L      +   L     +R++L     +LV+SIA  Y   G  + DL Q G IGLL+G E+F+ ++G ++STY
Subjt:  AAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTY

Query:  TYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLT
         YWWIRQ + RAL   SR +RLP H+ + +  I  A   L  K    P+   +AESL +    VR  TE   +  S+     DR        +PG  + +
Subjt:  TYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLT

Query:  ----------PENMVMRKLMKQELKRLLN-TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLK
                  P +      +K+E+ +L++ TL +RE  I+ LY+GL+ E   ++E+I K + LSRE +R++ +  L KLK
Subjt:  ----------PENMVMRKLMKQELKRLLN-TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLK

AT2G36990.1 RNApolymerase sigma-subunit F4.7e-4734.16Show/hide
Query:  DGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDR
        +G V  K   +K+ K+ G   ++       GP     L+ KEEAEL   ++   +LEK KT++      EPT  + A A+G     +   + R R SR++
Subjt:  DGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDR

Query:  LIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPP
        LI    +LV+ IA  YQ +GL+ QDL QEG++GL+K  E+F+P  G + +TY YWWIRQ+I +++ + SR +RLP ++  ++ +++EA      + +  P
Subjt:  LIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPP

Query:  THKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGK
        + +E+A  + V    +  +   ++ P+S+ QPI      T QEI P     TP   V ++LM+  ++ LLN LS +E  I+ L FG++G   +S  EIG+
Subjt:  THKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGK

Query:  SLNLSRESIRRINITTLSKLKK
           LS+E +R++    L +LK+
Subjt:  SLNLSRESIRRINITTLSKLKK

AT3G53920.1 RNApolymerase sigma-subunit C9.5e-3230.64Show/hide
Query:  KEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAER
        + E E+   +K  A +E+ +T++ E      +    A A G     + R L      RD L++    LV+ +A  Y+G G++ +DL Q G +G+L+GAER
Subjt:  KEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAER

Query:  FEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHL----GIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDR
        F+  RG+K STY  +WIR+++   + + +R V +P  + + ++ I +A   L    GIK +     +E+A+     V  +R   +  K   SI++ + D 
Subjt:  FEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHL----GIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDR

Query:  GCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYL
              E  P     +PE  VMR+  ++++  LL  L  RE  ++ L +GL    P+S EEIGK L +S+E IR+I    ++KL+     + L+ YL
Subjt:  GCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYL

AT5G13730.1 sigma factor 47.1e-8850.14Show/hide
Query:  GTVAWKKKRRKRRKEV-------------GVKAEENWVALS-SGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSI
        G  + K+++R+RR+ V             GV+AE   +++   G  R G+LS  EE +LCL LKE A+LE   T +   +E+E  +  LA   G K  S 
Subjt:  GTVAWKKKRRKRRKEV-------------GVKAEENWVALS-SGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSI

Query:  DRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAE
        + ILCR +E+R+++ RCY +LV+SIA  YQGKGL+LQDL QEG+IGLL+GAERF+P+RG+KLSTY YWWI+QAI+RA+  KSRLV+LPG M ++ +++AE
Subjt:  DRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAE

Query:  ANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGL
        A+N L  KL R P+ +E+AE L ++VS VRL  ERS+ P+S+++  +  G +TLQEI+ GPD   PE MV R+ MK E+++LL +L+ RE+ +L LYFGL
Subjt:  ANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGL

Query:  NGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDY
        NGE P SFEEIGKSL LSRE +R+IN   L KL+    ++ LK Y
Subjt:  NGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTCTCTTGCAATCGAGATATTCACTTCTCTGAACAATTGTACTCTGAACAGCAAGCCGTTTGTTGCCATACTTCCCAATGCTGTTACATACTAAATGCTCAAGG
CCCCAACTTCATCAGCAATGACACATTAACCCTTCCGCCGCCGCCTGAGGCGGCTGTTCTGGCGGTAGAAGCGGCGAGAGAACATGTTCTGGTGGAAGCCAGAGGGTTTT
CTGAAGATTGGAGCTGCAAAAACCTTGAGAGAATGGAGGAGAGTTGTGGGGGTGATGGGACTGTGGCTTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAGGTGGGGGTG
AAAGCTGAGGAAAATTGGGTTGCCTTGTCCAGTGGCCCCTTGAGACCTGGATATTTGAGCCCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGAGGCAGCACAGCT
TGAAAAGGCAAAAACCAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTAGCCATTGCCCTGGGGACCAAACTAGGGAGTATAGATAGAATTCTTTGTA
GAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCAATTGCTGCTCCATATCAAGGCAAAGGGTTAAGCCTTCAAGACCTCACTCAGGAA
GGGAACATTGGTCTCCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACGTATACTTATTGGTGGATAAGACAAGCTATAATTCGAGCCTTGGA
TAAAAAGTCAAGACTTGTTAGACTGCCGGGTCACATGGGTCAGATGGTATCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGACCGCCCACCCACA
AAGAAGTTGCCGAATCTCTTAAAGTCCATGTTTCAACTGTAAGACTAGTTACGGAAAGGAGTAAGCGTCCGATTTCAATCAATCAACCAATAAACGACCGGGGTTGCTTA
ACCTTGCAGGAGATCATGCCAGGACCAGACAATTTGACACCAGAGAATATGGTAATGAGAAAACTGATGAAGCAAGAACTGAAGAGGCTTCTTAATACTCTTAGCAAAAG
AGAAGCACACATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCTCAGTCCTTTGAGGAGATAGGTAAGTCGTTGAATCTCTCTCGAGAGTCGATCCGACGAATCA
ATATCACCACATTATCGAAACTAAAGAAGACTGGCATTCTAGACTACCTTAAAGATTATCTAGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACTCTCTTGCAATCGAGATATTCACTTCTCTGAACAATTGTACTCTGAACAGCAAGCCGTTTGTTGCCATACTTCCCAATGCTGTTACATACTAAATGCTCAAGG
CCCCAACTTCATCAGCAATGACACATTAACCCTTCCGCCGCCGCCTGAGGCGGCTGTTCTGGCGGTAGAAGCGGCGAGAGAACATGTTCTGGTGGAAGCCAGAGGGTTTT
CTGAAGATTGGAGCTGCAAAAACCTTGAGAGAATGGAGGAGAGTTGTGGGGGTGATGGGACTGTGGCTTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAGGTGGGGGTG
AAAGCTGAGGAAAATTGGGTTGCCTTGTCCAGTGGCCCCTTGAGACCTGGATATTTGAGCCCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGAGGCAGCACAGCT
TGAAAAGGCAAAAACCAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTAGCCATTGCCCTGGGGACCAAACTAGGGAGTATAGATAGAATTCTTTGTA
GAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCAATTGCTGCTCCATATCAAGGCAAAGGGTTAAGCCTTCAAGACCTCACTCAGGAA
GGGAACATTGGTCTCCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACGTATACTTATTGGTGGATAAGACAAGCTATAATTCGAGCCTTGGA
TAAAAAGTCAAGACTTGTTAGACTGCCGGGTCACATGGGTCAGATGGTATCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGACCGCCCACCCACA
AAGAAGTTGCCGAATCTCTTAAAGTCCATGTTTCAACTGTAAGACTAGTTACGGAAAGGAGTAAGCGTCCGATTTCAATCAATCAACCAATAAACGACCGGGGTTGCTTA
ACCTTGCAGGAGATCATGCCAGGACCAGACAATTTGACACCAGAGAATATGGTAATGAGAAAACTGATGAAGCAAGAACTGAAGAGGCTTCTTAATACTCTTAGCAAAAG
AGAAGCACACATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCTCAGTCCTTTGAGGAGATAGGTAAGTCGTTGAATCTCTCTCGAGAGTCGATCCGACGAATCA
ATATCACCACATTATCGAAACTAAAGAAGACTGGCATTCTAGACTACCTTAAAGATTATCTAGTATAGATATTTCAAGCTATAATGAAAAGTTACAAGCAAAGATTGGAT
CGACTGTTGAAGGATTTTGAAGAGTATTAATTTTATGCATTAAGATTTAAATCTCGCTTTGGTACATCAAAATGAGTTATCCAAATGGTTGGAAATAGTTAAAACCAATT
TGGTTGATGTAGATAGAAGATCTATTGAAGCACTGGTCTTTTGTTTGCTGGTGTAAATAATAAATAAGAAGCTGAATCAATTGATGTTTACATGATGTATTCGTATTGTT
TTATAAAATTTACAATGTTTACTTGAAGTTTATGATACAATTGAAAGCTGATTGTAGAGGCTAAAATAGTGAATCATGGAAAACAATATCGAG
Protein sequenceShow/hide protein sequence
MELSCNRDIHFSEQLYSEQQAVCCHTSQCCYILNAQGPNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGV
KAEENWVALSSGPLRPGYLSPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQE
GNIGLLKGAERFEPNRGHKLSTYTYWWIRQAIIRALDKKSRLVRLPGHMGQMVSRIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPINDRGCL
TLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRESIRRINITTLSKLKKTGILDYLKDYLV