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Lsi03G012110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G012110
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionarabinogalactan protein 23
Genome locationchr03:22660101..22665801
RNA-Seq ExpressionLsi03G012110
SyntenyLsi03G012110
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650936.1 hypothetical protein Csa_001741 [Cucumis sativus]1.1e-1898.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
KAG6581581.1 hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1898.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
XP_011651782.1 uncharacterized protein LOC105434940 [Cucumis sativus]1.1e-1898.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
XP_022934952.1 uncharacterized protein LOC111441965 [Cucurbita moschata]1.1e-1898.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
XP_038905300.1 uncharacterized protein LOC120091370 [Benincasa hispida]8.4e-19100Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
TrEMBL top hitse value%identityAlignment
A0A0A0LD25 Uncharacterized protein5.3e-1998.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
A0A1S4E3E9 uncharacterized protein LOC1079918655.3e-1998.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
A0A6J1DEC8 uncharacterized protein LOC1110202775.9e-1894.23Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFT+AFSAVPLTLY+PPLRS NLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
A0A6J1F484 uncharacterized protein LOC1114419655.3e-1998.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
A0A6J1J7E0 uncharacterized protein LOC1114819235.3e-1998.08Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
        MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARH
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARH
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 239.7e-1062.5Show/hide
Query:  KIACAVLFAAATVSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL
        KIAC VLFAAA+++A +A +E  APAPGP+S A+  LPA+GSL+GASL+S+ +YYL
Subjt:  KIACAVLFAAATVSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)3.2e-0861.4Show/hide
Query:  KIACAVLFAAATVSAAVAHDEALAPAPGP-SSGAATVLPAIGSLIGASLLSVAAYYL
        KIAC V+FAAA+++A +A  E  APAPGP +SGA+  +PA+GSL+GASL+S+ AYYL
Subjt:  KIACAVLFAAATVSAAVAHDEALAPAPGP-SSGAATVLPAIGSLIGASLLSVAAYYL
AT3G52105.1 unknown protein1.3e-1266.67Show/hide
Query:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRAR
        MLQ FFT+AFSA PLTLYIPP+R   +FVETMEE+  E R Y+ R++PRAR
Subjt:  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRAR
AT3G57690.1 arabinogalactan protein 236.9e-1162.5Show/hide
Query:  KIACAVLFAAATVSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL
        KIAC VLFAAA+++A +A +E  APAPGP+S A+  LPA+GSL+GASL+S+ +YYL
Subjt:  KIACAVLFAAATVSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGTTCTTCTTCACCGTTGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCTCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCG
GGAGTCAAGAACATACACCAATCGGGTGTATCCGCGAGCTCGCCATAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGCCGTGGCTCACGATGAGG
CGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCACTGTTCTCCCGGCAATTGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGTTCTTCTTCACCGTTGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCTCCGCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCG
GGAGTCAAGAACATACACCAATCGGGTGTATCCGCGAGCTCGCCATAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGCCGTGGCTCACGATGAGG
CGTTGGCTCCAGCACCTGGACCAAGCAGTGGCGCCGCCACTGTTCTCCCGGCAATTGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCCGCCTACTACTTGCAATGA
Protein sequenceShow/hide protein sequence
MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAATVLPAIGSLIGASLLSVAAYYLQ