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Lsi03G012530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G012530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMediator of RNA polymerase II transcription subunit 37f
Genome locationchr03:23132132..23135393
RNA-Seq ExpressionLsi03G012530
SyntenyLsi03G012530
Gene Ontology termsGO:0000166 - nucleotide binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG99231.1 Mediator of RNA polymerase II transcription subunit 37f [Prunus dulcis]4.5e-0456.86Show/hide
Query:  RIIPGAIYPIDPVNMFAVDFPMFSTVAPLPIPGVINLEIPKSETRAVMYAI
        R +PGA+YPIDP N+FAV+FPM S     P P + NL IPKSET+AV+ ++
Subjt:  RIIPGAIYPIDPVNMFAVDFPMFSTVAPLPIPGVINLEIPKSETRAVMYAI

KAG6670305.1 hypothetical protein CIPAW_01G302200 [Carya illinoinensis]2.4e-0530.19Show/hide
Query:  LGIIPWKLLNERFRSNNPRCGNSPNASGISEVKRLCDKKSCSNFDNLLISAGIVPFSRFDVKFNPAKLGSLPPSPIPANSSSSRLLQFLREVMNGSRLSE
        +G +P +LL E  +  + R  +S   +GIS ++  CDK SC + + L I  G++P + F +KF   +L +L      + ++   + + L    N +R  +
Subjt:  LGIIPWKLLNERFRSNNPRCGNSPNASGISEVKRLCDKKSCSNFDNLLISAGIVPFSRFDVKFNPAKLGSLPPSPIPANSSSSRLLQFLREVMNGSRLSE

Query:  VFLKERGRSPLNWLLYRLRFHSFGQFPISSGILPVRKLLERSTLSNDVQLEKREGGTLP
           K  G+ P   LL +    S    PIS+GI P  +LL R   S+ +   K E G LP
Subjt:  VFLKERGRSPLNWLLYRLRFHSFGQFPISSGILPVRKLLERSTLSNDVQLEKREGGTLP

KAG7018117.1 hypothetical protein SDJN02_19985, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-2288.89Show/hide
Query:  MYDALPEGKEGCFISEQGLMRRVVVTYNNWSPRIQNQILKQEKEHSSEENHIKPKNNTTVEMT
        M DALPEG+EGCFISEQGLMRRVVVTY+NWSPRIQNQ LKQEKEHS EENHIK  NNTTVEMT
Subjt:  MYDALPEGKEGCFISEQGLMRRVVVTYNNWSPRIQNQILKQEKEHSSEENHIKPKNNTTVEMT

TrEMBL top hitse value%identityAlignment
A0A4Y1R548 Mediator of RNA polymerase II transcription subunit 37f2.2e-0456.86Show/hide
Query:  RIIPGAIYPIDPVNMFAVDFPMFSTVAPLPIPGVINLEIPKSETRAVMYAI
        R +PGA+YPIDP N+FAV+FPM S     P P + NL IPKSET+AV+ ++
Subjt:  RIIPGAIYPIDPVNMFAVDFPMFSTVAPLPIPGVINLEIPKSETRAVMYAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCATCTTAGCGGAGATATAGCCGATAGATATGGAGATGGAGGTGGAGAAGCTTTCCTCGACTCTGCTATAACTCACTTGACACTCCTAATCCTAATTTTTTACAT
TTGCTTGAGAATTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGACTTTCCCATGTTTTCAACAGTTGCACCGCTTCCCATTCCAGGGGTCA
TTAACCTTGAGATACCAAAGTCAGAAACAAGGGCTGTCATGTATGCCATTCCTTCCGCTATATCACTGCATATATTCACCCTCTCAATAAGGTTTAATTCTGAAGAACCT
GGAGCCGAGCTGGTAGGTGAATGTGGATATAGATGGTTATCCAAGCTTCCATTTGCCATATATGGTAGAACTAGAGCTTTAAAATCCGGAAGACTACAAGCTGTTATAAT
TCTGATAAGGTTTCTGTGGCGAATTCGCTTCAAAACTTCGCATTCCCTGTTAAAACTCTTTGTGGAATTTTCAGATTGTGCTGGTATTCCAGGAATTGTCCCACAAAGGA
GTGGATTGTTCAAAAATGACAGAGATGTGGATGATTTGAAAAATCCCTCTCTTGGAATCATTCCTTGGAAGTTATTGAATGAAAGATTCAGATCCAACAATCCAAGATGT
GGCAACTCGCCTAATGCTTCTGGAATATCTGAAGTGAAGAGGTTGTGTGATAAGAAAAGCTGCTCCAATTTTGACAACCTGCTTATCTCTGCAGGAATTGTTCCGTTTAG
TAGATTTGATGTCAAATTCAACCCTGCAAAATTGGGCAGCCTCCCTCCAAGCCCCATCCCAGCCAATTCAAGCTCCTCTAGACTACTGCAGTTTCTAAGAGAAGTAATGA
ACGGTTCAAGATTGAGCGAAGTGTTTCTTAAAGAAAGAGGAAGATCTCCACTGAACTGGTTGTTGTACAGATTGAGATTCCACAGCTTTGGACAATTTCCAATTTCTTCT
GGAATTCTTCCTGTTAGGAAGTTGTTGGAAAGGTCTACATTAAGCAACGACGTGCAATTAGAAAAGAGAGAAGGAGGAACTTTGCCATTTAGCTTTAAGCCTAGACAAAC
TAGCAAGGGAAGTTGGTATGGGACCTTCCAAACTGTTGCTGTCGAGGAGAAGGCGGTGAAGATTTCGAAGAGAAAAAAGTTCAGAAGGAATTTCCCCAAAAAGATAATTG
TTAACAATTTCCAGAATTCGAAGACCCGTGAGATTGGAGAGGAAGGGTGGAATCTTTCCCACAAGTCCAACACCAATCAAACTGATCTTCGATACCCGATGACGGTGTCG
GTCACAAGCAACACCAGTGAAGTTGCATACATCAACAGCCTCAATCCAAGTGGGAGTGGGGTCATGTATGATGCACTTCCTGAAGGCAAGGAGGGCTGCTTTATCAGTGA
GCAAGGACTTATGAGGAGGGTAGTGGTGACCTATAATAACTGGAGTCCCAGAATTCAAAACCAGATACTGAAACAGGAGAAGGAACACAGCTCTGAAGAAAACCATATCA
AGCCGAAAAACAATACTACAGTGGAAATGACTTGTAAGGTTACCTTCTATCATCATATCATCCTTTACTGCCTTACATTTCTTCTTCCTGTTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCATCTTAGCGGAGATATAGCCGATAGATATGGAGATGGAGGTGGAGAAGCTTTCCTCGACTCTGCTATAACTCACTTGACACTCCTAATCCTAATTTTTTACAT
TTGCTTGAGAATTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGACTTTCCCATGTTTTCAACAGTTGCACCGCTTCCCATTCCAGGGGTCA
TTAACCTTGAGATACCAAAGTCAGAAACAAGGGCTGTCATGTATGCCATTCCTTCCGCTATATCACTGCATATATTCACCCTCTCAATAAGGTTTAATTCTGAAGAACCT
GGAGCCGAGCTGGTAGGTGAATGTGGATATAGATGGTTATCCAAGCTTCCATTTGCCATATATGGTAGAACTAGAGCTTTAAAATCCGGAAGACTACAAGCTGTTATAAT
TCTGATAAGGTTTCTGTGGCGAATTCGCTTCAAAACTTCGCATTCCCTGTTAAAACTCTTTGTGGAATTTTCAGATTGTGCTGGTATTCCAGGAATTGTCCCACAAAGGA
GTGGATTGTTCAAAAATGACAGAGATGTGGATGATTTGAAAAATCCCTCTCTTGGAATCATTCCTTGGAAGTTATTGAATGAAAGATTCAGATCCAACAATCCAAGATGT
GGCAACTCGCCTAATGCTTCTGGAATATCTGAAGTGAAGAGGTTGTGTGATAAGAAAAGCTGCTCCAATTTTGACAACCTGCTTATCTCTGCAGGAATTGTTCCGTTTAG
TAGATTTGATGTCAAATTCAACCCTGCAAAATTGGGCAGCCTCCCTCCAAGCCCCATCCCAGCCAATTCAAGCTCCTCTAGACTACTGCAGTTTCTAAGAGAAGTAATGA
ACGGTTCAAGATTGAGCGAAGTGTTTCTTAAAGAAAGAGGAAGATCTCCACTGAACTGGTTGTTGTACAGATTGAGATTCCACAGCTTTGGACAATTTCCAATTTCTTCT
GGAATTCTTCCTGTTAGGAAGTTGTTGGAAAGGTCTACATTAAGCAACGACGTGCAATTAGAAAAGAGAGAAGGAGGAACTTTGCCATTTAGCTTTAAGCCTAGACAAAC
TAGCAAGGGAAGTTGGTATGGGACCTTCCAAACTGTTGCTGTCGAGGAGAAGGCGGTGAAGATTTCGAAGAGAAAAAAGTTCAGAAGGAATTTCCCCAAAAAGATAATTG
TTAACAATTTCCAGAATTCGAAGACCCGTGAGATTGGAGAGGAAGGGTGGAATCTTTCCCACAAGTCCAACACCAATCAAACTGATCTTCGATACCCGATGACGGTGTCG
GTCACAAGCAACACCAGTGAAGTTGCATACATCAACAGCCTCAATCCAAGTGGGAGTGGGGTCATGTATGATGCACTTCCTGAAGGCAAGGAGGGCTGCTTTATCAGTGA
GCAAGGACTTATGAGGAGGGTAGTGGTGACCTATAATAACTGGAGTCCCAGAATTCAAAACCAGATACTGAAACAGGAGAAGGAACACAGCTCTGAAGAAAACCATATCA
AGCCGAAAAACAATACTACAGTGGAAATGACTTGTAAGGTTACCTTCTATCATCATATCATCCTTTACTGCCTTACATTTCTTCTTCCTGTTTCATAA
Protein sequenceShow/hide protein sequence
MSHLSGDIADRYGDGGGEAFLDSAITHLTLLILIFYICLRIIPGAIYPIDPVNMFAVDFPMFSTVAPLPIPGVINLEIPKSETRAVMYAIPSAISLHIFTLSIRFNSEEP
GAELVGECGYRWLSKLPFAIYGRTRALKSGRLQAVIILIRFLWRIRFKTSHSLLKLFVEFSDCAGIPGIVPQRSGLFKNDRDVDDLKNPSLGIIPWKLLNERFRSNNPRC
GNSPNASGISEVKRLCDKKSCSNFDNLLISAGIVPFSRFDVKFNPAKLGSLPPSPIPANSSSSRLLQFLREVMNGSRLSEVFLKERGRSPLNWLLYRLRFHSFGQFPISS
GILPVRKLLERSTLSNDVQLEKREGGTLPFSFKPRQTSKGSWYGTFQTVAVEEKAVKISKRKKFRRNFPKKIIVNNFQNSKTREIGEEGWNLSHKSNTNQTDLRYPMTVS
VTSNTSEVAYINSLNPSGSGVMYDALPEGKEGCFISEQGLMRRVVVTYNNWSPRIQNQILKQEKEHSSEENHIKPKNNTTVEMTCKVTFYHHIILYCLTFLLPVS