; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G012580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G012580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionR3h domain containing protein, putative
Genome locationchr03:23204410..23204634
RNA-Seq ExpressionLsi03G012580
SyntenyLsi03G012580
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136625.2 uncharacterized protein LOC101215817 isoform X1 [Cucumis sativus]2.4e-3395.95Show/hide
Query:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        M GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQ RHSAFQAPFCQQPLSFDYSQNH
Subjt:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
XP_008443221.1 PREDICTED: uncharacterized protein LOC103486865 isoform X2 [Cucumis melo]4.5e-3293.24Show/hide
Query:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        M GTQASVNYGPHPS VVSPFCAMGL+QASRDASYEQWQ+AAMMYAHSYNQ RHSAFQAPFCQQPLSFDYSQNH
Subjt:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
XP_022152036.1 uncharacterized protein LOC111019846 [Momordica charantia]1.7e-3193.06Show/hide
Query:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        GTQASV+YGPHPSPVVSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
Subjt:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
XP_023527688.1 uncharacterized protein LOC111790835 [Cucurbita pepo subsp. pepo]3.2e-3090.28Show/hide
Query:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        GTQ S+NYGPHPSPVVSPF AMG+++ SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
Subjt:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
XP_038903441.1 uncharacterized protein LOC120090027 [Benincasa hispida]8.2e-3497.3Show/hide
Query:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        M GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
Subjt:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
TrEMBL top hitse value%identityAlignment
A0A0A0LFE9 Uncharacterized protein1.2e-3395.95Show/hide
Query:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        M GTQASVNYGPHPSPVVSPFCAMGL+QASRDASYEQWQSAAMMYAHSYNQ RHSAFQAPFCQQPLSFDYSQNH
Subjt:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
A0A1S3B8A9 uncharacterized protein LOC103486865 isoform X22.2e-3293.24Show/hide
Query:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        M GTQASVNYGPHPS VVSPFCAMGL+QASRDASYEQWQ+AAMMYAHSYNQ RHSAFQAPFCQQPLSFDYSQNH
Subjt:  MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
A0A6J1DGF4 uncharacterized protein LOC1110198468.3e-3293.06Show/hide
Query:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        GTQASV+YGPHPSPVVSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
Subjt:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
A0A6J1I664 uncharacterized protein LOC1114699953.5e-3090.28Show/hide
Query:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        GTQASV+YGPHPSP VSPFC +GL+Q SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPF QQPLSFDYSQNH
Subjt:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
A0A6J1J0D7 uncharacterized protein LOC1114823201.6e-3090.28Show/hide
Query:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
        GTQ S+NYGPHPSPVVSPF AMG+++ SRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
Subjt:  GTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G40960.1 Single-stranded nucleic acid binding R3H protein5.5e-1256.52Show/hide
Query:  SVNYGPHPSPVVSPFCAMGLHQASRDAS-YEQW-QSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQN
        S+N G H   V+SP    GL+Q SRDA+ Y QW  +AA+MY HSY+  R+S FQA F  QPLSFDY QN
Subjt:  SVNYGPHPSPVVSPFCAMGLHQASRDAS-YEQW-QSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQN
AT3G56680.1 Single-stranded nucleic acid binding R3H protein1.3e-1351.47Show/hide
Query:  ASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQN
        A + +GPHPS ++SP+        + DA Y  W +AAMMYAH Y Q R+ + QA F QQPLSFDY QN
Subjt:  ASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQN
AT5G33406.1 hAT dimerisation domain-containing protein / transposase-related2.3e-1048.53Show/hide
Query:  ASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQN
        A + +GP PS  +SP+        + DA Y    +AAMMYAH Y QLR+   QA F QQPLSFDY +N
Subjt:  ASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGAACTCAAGCTTCAGTTAACTATGGGCCTCATCCAAGTCCTGTTGTAAGCCCTTTCTGCGCAATGGGTTTACACCAGGCATCTAGAGATGCTTCTTATGAGCA
GTGGCAGAGTGCTGCAATGATGTATGCCCATTCCTACAACCAGCTCAGGCACTCTGCTTTTCAGGCCCCATTCTGTCAGCAACCCCTCAGCTTTGACTATTCTCAAAACC
ATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGAACTCAAGCTTCAGTTAACTATGGGCCTCATCCAAGTCCTGTTGTAAGCCCTTTCTGCGCAATGGGTTTACACCAGGCATCTAGAGATGCTTCTTATGAGCA
GTGGCAGAGTGCTGCAATGATGTATGCCCATTCCTACAACCAGCTCAGGCACTCTGCTTTTCAGGCCCCATTCTGTCAGCAACCCCTCAGCTTTGACTATTCTCAAAACC
ATTAG
Protein sequenceShow/hide protein sequence
MLGTQASVNYGPHPSPVVSPFCAMGLHQASRDASYEQWQSAAMMYAHSYNQLRHSAFQAPFCQQPLSFDYSQNH