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Lsi03G013050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G013050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionmRNA cap-binding protein
Genome locationchr03:23873615..23877993
RNA-Seq ExpressionLsi03G013050
SyntenyLsi03G013050
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0006417 - regulation of translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141135.1 eukaryotic translation initiation factor NCBP [Cucumis sativus]2.9e-2087.3Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN
        ME VGE RDFDSANDNNK NSAQ LLDSS+ PSLADDTNAKEAE+LSERIARDLKDGLHPLK+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN

XP_008464961.1 PREDICTED: eukaryotic translation initiation factor NCBP [Cucumis melo]2.2e-2087.3Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN
        ME VGEKRDFDSANDNNK NSAQ LLDSS+ PSLADDTNAKEAE+ SERIARDLKDGLHPLK+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN

XP_022930593.1 eukaryotic translation initiation factor NCBP [Cucurbita moschata]5.5e-1979.41Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADD-----TNAKEAEDLSERIARDLKDGLHPLKN
        MELV EK+DFDSANDNNKLNSAQA+LDSSYPPS+A D      N+KEAEDLSER+ARDLKDGLHPLK+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADD-----TNAKEAEDLSERIARDLKDGLHPLKN

XP_038904119.1 eukaryotic translation initiation factor NCBP isoform X1 [Benincasa hispida]3.7e-2387.88Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKNDGF
        MELVGEKRDFDSANDNNKLNSAQ L DSS+PPSL+DDTNAKEAEDLSER+ARDLKDGLHPLK  G+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKNDGF

XP_038904120.1 eukaryotic translation initiation factor NCBP isoform X2 [Benincasa hispida]1.8e-2290.48Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN
        MELVGEKRDFDSANDNNKLNSAQ L DSS+PPSL+DDTNAKEAEDLSER+ARDLKDGLHPLK+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN

TrEMBL top hitse value%identityAlignment
A0A0A0LI71 Uncharacterized protein6.4e-2180.56Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKNDGFRISLLE
        ME VGE RDFDSANDNNK NSAQ LLDSS+ PSLADDTNAKEAE+LSERIARDLKDGLHPLK      SL E
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKNDGFRISLLE

A0A1S3CMT8 mRNA cap-binding protein1.1e-2087.3Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN
        ME VGEKRDFDSANDNNK NSAQ LLDSS+ PSLADDTNAKEAE+ SERIARDLKDGLHPLK+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN

A0A5A7UUL0 mRNA cap-binding protein1.1e-2087.3Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN
        ME VGEKRDFDSANDNNK NSAQ LLDSS+ PSLADDTNAKEAE+ SERIARDLKDGLHPLK+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKN

A0A6J1EVP3 mRNA cap-binding protein2.7e-1979.41Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADD-----TNAKEAEDLSERIARDLKDGLHPLKN
        MELV EK+DFDSANDNNKLNSAQA+LDSSYPPS+A D      N+KEAEDLSER+ARDLKDGLHPLK+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADD-----TNAKEAEDLSERIARDLKDGLHPLKN

A0A6J1IS20 mRNA cap-binding protein2.7e-1979.41Show/hide
Query:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADD-----TNAKEAEDLSERIARDLKDGLHPLKN
        MELV EK+DFDSANDNNKLNSAQA+LDSSYPPS+A D      N+KEAEDLSER+ARDLKDGLHPLK+
Subjt:  MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADD-----TNAKEAEDLSERIARDLKDGLHPLKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTGGTAGGCGAGAAGAGGGATTTTGATTCTGCAAACGACAACAACAAGCTCAACTCTGCTCAAGCACTTCTCGATTCTTCTTATCCACCCTCGCTCGCTGATGA
CACAAATGCCAAAGAAGCTGAAGATTTAAGTGAACGCATAGCTCGAGACCTCAAAGATGGCCTTCATCCCCTAAAGAATGACGGATTTAGGATTTCATTGTTGGAACTCA
GTCGGGTAACTGTTCTACCTCAGGGTGTTCTATTTGTGAAGAGGGGAGTCGACGATTGTCAGGATGGTGACGGCATATCAGTGGTGAAGGGAGGACGACTGAACGAAATT
GGGGATGAGAGTAGAATAGGAGGAGAGGGGAGAACATAA
mRNA sequenceShow/hide mRNA sequence
ATTCTGTCGTACCAAAGGCGCTTTCCCCCTCTCCGGTTCCGTGTCGGTCTGCTTAATTTGCAGTCTCTTGGACGCACAAAGTTGGTGACAAAGGCAATTTAGGGCACACT
AAGTCCGAAGAAGAAGCTGTCAATGGAGTTGGTAGGCGAGAAGAGGGATTTTGATTCTGCAAACGACAACAACAAGCTCAACTCTGCTCAAGCACTTCTCGATTCTTCTT
ATCCACCCTCGCTCGCTGATGACACAAATGCCAAAGAAGCTGAAGATTTAAGTGAACGCATAGCTCGAGACCTCAAAGATGGCCTTCATCCCCTAAAGAATGACGGATTT
AGGATTTCATTGTTGGAACTCAGTCGGGTAACTGTTCTACCTCAGGGTGTTCTATTTGTGAAGAGGGGAGTCGACGATTGTCAGGATGGTGACGGCATATCAGTGGTGAA
GGGAGGACGACTGAACGAAATTGGGGATGAGAGTAGAATAGGAGGAGAGGGGAGAACATAA
Protein sequenceShow/hide protein sequence
MELVGEKRDFDSANDNNKLNSAQALLDSSYPPSLADDTNAKEAEDLSERIARDLKDGLHPLKNDGFRISLLELSRVTVLPQGVLFVKRGVDDCQDGDGISVVKGGRLNEI
GDESRIGGEGRT