; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G013080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G013080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTubulin alpha chain
Genome locationchr03:23891533..23892164
RNA-Seq ExpressionLsi03G013080
SyntenyLsi03G013080
Gene Ontology termsGO:0000226 - microtubule cytoskeleton organization (biological process)
GO:0000278 - mitotic cell cycle (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005200 - structural constituent of cytoskeleton (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR000217 - Tubulin
IPR002452 - Alpha tubulin
IPR008280 - Tubulin/FtsZ, C-terminal
IPR018316 - Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 - Tubulin, C-terminal
IPR037103 - Tubulin/FtsZ-like, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141134.1 tubulin alpha-6 chain [Cucumis sativus]9.6e-5099.03Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        +DY
Subjt:  EDY

XP_008464962.1 PREDICTED: tubulin alpha-3 chain-like [Cucumis melo]4.3e-50100Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

XP_022155952.1 tubulin alpha-3 chain-like [Momordica charantia]5.6e-5099.03Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAED+DEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

XP_022930580.1 tubulin alpha-3 chain-like [Cucurbita moschata]4.3e-50100Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

XP_038904017.1 tubulin alpha-5 chain-like [Benincasa hispida]4.3e-50100Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

TrEMBL top hitse value%identityAlignment
A0A5D3D5F0 Tubulin alpha chain2.1e-50100Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

A0A6J1EX84 Tubulin alpha chain2.1e-50100Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

A0A6J1F2F1 Tubulin alpha chain2.1e-50100Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

A0A6J1I8Z7 Tubulin alpha chain2.1e-50100Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

A0A6J1IRT1 Tubulin alpha chain2.1e-50100Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG

Query:  EDY
        EDY
Subjt:  EDY

SwissProt top hitse value%identityAlignment
B9DHQ0 Tubulin alpha-5 chain6.4e-4994.23Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE
        CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DEE+E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE

Query:  GEDY
        GEDY
Subjt:  GEDY

O22349 Tubulin alpha-3 chain2.9e-4994.23Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EE
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E +E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EE

Query:  GEDY
        GEDY
Subjt:  GEDY

P28752 Tubulin alpha-1 chain6.4e-4993.27Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EE
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E ++
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EE

Query:  GEDY
        GEDY
Subjt:  GEDY

Q43473 Tubulin alpha-1 chain6.4e-4993.27Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EE
        CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E +E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EE

Query:  GEDY
        G+DY
Subjt:  GEDY

Q56WH1 Tubulin alpha-3 chain6.4e-4994.23Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE
        CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DEE+E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE

Query:  GEDY
        GEDY
Subjt:  GEDY

Arabidopsis top hitse value%identityAlignment
AT1G04820.1 tubulin alpha-4 chain3.0e-4992.31Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE
        CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DE++E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE

Query:  GEDY
        GE+Y
Subjt:  GEDY

AT1G50010.1 tubulin alpha-2 chain3.0e-4992.31Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE
        CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DE++E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE

Query:  GEDY
        GE+Y
Subjt:  GEDY

AT4G14960.2 Tubulin/FtsZ family protein3.0e-4992.31Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE
        CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DE++E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE

Query:  GEDY
        GE+Y
Subjt:  GEDY

AT5G19770.1 tubulin alpha-34.6e-5094.23Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE
        CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DEE+E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE

Query:  GEDY
        GEDY
Subjt:  GEDY

AT5G19780.1 tubulin alpha-54.6e-5094.23Show/hide
Query:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE
        CPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE   DEE+E
Subjt:  CPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE-DVDEEEE

Query:  GEDY
        GEDY
Subjt:  GEDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCTTGTGCCATCGGAATTTTCCAGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGTGATCTCGCCAAGGTGCAGCG
AGCTGTCTGTATGATAAGCAACAGCACAGCCGTTGCCGAAGTCTTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCTTTTGTCCATTGGTATGTGG
GGGAGGGCATGGAGGAAGGTGAATTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGATTACGAGGAAGTGGGGGCCGAAGATGTCGATGAAGAGGAAGAAGGG
GAAGATTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCTTGTGCCATCGGAATTTTCCAGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAACCCCCAAGTGTTGTTCCTGGGGGTGATCTCGCCAAGGTGCAGCG
AGCTGTCTGTATGATAAGCAACAGCACAGCCGTTGCCGAAGTCTTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCTTTTGTCCATTGGTATGTGG
GGGAGGGCATGGAGGAAGGTGAATTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAAAAGGATTACGAGGAAGTGGGGGCCGAAGATGTCGATGAAGAGGAAGAAGGG
GAAGATTATTAA
Protein sequenceShow/hide protein sequence
MALVPSEFSRCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG
EDY