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Lsi03G013110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G013110
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpentatricopeptide repeat-containing protein At1g10910, chloroplastic
Genome locationchr03:23912642..23913856
RNA-Seq ExpressionLsi03G013110
SyntenyLsi03G013110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581658.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.0e-3985.42Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELSVIGNGYHRH+L+TRLPTPSSVMASA H+VPRLKN+  NSIA++PK+PQFLPDSP GKL NGG++RHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
KAG7018152.1 Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]8.0e-3985.42Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELSVIGNGYHRH+L+TRLPTPSSVMASA H+VPRLKN+  NSIA++PK+PQFLPDSP GKL NGG++RHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
XP_008464969.1 PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis melo]1.0e-3887.5Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELS++GNGYHRHVLRTRLPTP SVMASASHAVP LKNN SNS+AILPKEPQFLP S   KLFNG +KRHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
XP_022930554.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucurbita moschata]2.7e-3987.5Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELSVIGNGYHRH+L+TRLPTPSSVMASA H+VPRLKN+  NSIAILPK+PQFLPDSP GKL NGG++RHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
XP_038903773.1 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Benincasa hispida]5.3e-4394.79Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKN+H NSIAILPK+PQFLPDSPK KLFNGG+KRHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
TrEMBL top hitse value%identityAlignment
A0A0A0LI66 Uncharacterized protein2.8e-3776.36Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR---S
        MELS++ NGYHRHVLRTRLPTPSSVMASASHAV  +KNN SNS+AILPKEPQFLP S   KL NG +KRHSKSYLERQSAIAQVKDCSELAPALAR   S
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR---S

Query:  CLVIPSGWLV
         L     W++
Subjt:  CLVIPSGWLV
A0A1S3CN74 pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X15.1e-3987.5Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELS++GNGYHRHVLRTRLPTP SVMASASHAVP LKNN SNS+AILPKEPQFLP S   KLFNG +KRHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
A0A5A7URC2 Pentatricopeptide repeat-containing protein5.1e-3987.5Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELS++GNGYHRHVLRTRLPTP SVMASASHAVP LKNN SNS+AILPKEPQFLP S   KLFNG +KRHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
A0A6J1ERS3 pentatricopeptide repeat-containing protein At1g10910, chloroplastic1.3e-3987.5Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELSVIGNGYHRH+L+TRLPTPSSVMASA H+VPRLKN+  NSIAILPK+PQFLPDSP GKL NGG++RHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
A0A6J1IWQ9 pentatricopeptide repeat-containing protein At1g10910, chloroplastic2.1e-3785.42Show/hide
Query:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
        MELSVIGNGYHRH+L+TRLPTP SVMASA H+VPRLKN+  NSIAI+PK+PQFLPDSP GKL NGG++RHSKSYLERQSAIAQVKDCSELAPALAR
Subjt:  MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALAR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTCTCTGTTATTGGTAATGGATATCATCGCCACGTCCTTCGGACTCGGTTGCCTACACCTTCTTCTGTAATGGCTTCTGCATCGCACGCTGTCCCCAGGCTCAA
GAACAATCACTCTAACTCTATCGCAATTCTCCCTAAAGAGCCCCAATTCCTCCCCGACTCTCCAAAGGGTAAACTCTTCAATGGCGGTGAGAAGCGCCACTCGAAGTCAT
ACCTAGAGAGACAGTCCGCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGAGCTGTCTTGTAATTCCTTCGGGCTGGCTAGTATTTAAAGAG
CTAGCCCCCATTTCACTAATAAGATCTTGA
mRNA sequenceShow/hide mRNA sequence
CGGACAGTGAGTGGTTCGTTCAAATATCAACTGTTATCCACGGGCACCGTCGCGGTTGAGAGGGCGAACTGAACTCCCTCGCACTGTCTCGAAATGGAACTCTCTGTTAT
TGGTAATGGATATCATCGCCACGTCCTTCGGACTCGGTTGCCTACACCTTCTTCTGTAATGGCTTCTGCATCGCACGCTGTCCCCAGGCTCAAGAACAATCACTCTAACT
CTATCGCAATTCTCCCTAAAGAGCCCCAATTCCTCCCCGACTCTCCAAAGGGTAAACTCTTCAATGGCGGTGAGAAGCGCCACTCGAAGTCATACCTAGAGAGACAGTCC
GCTATTGCTCAAGTTAAAGATTGCTCCGAGTTGGCTCCGGCTCTTGCCAGGAGCTGTCTTGTAATTCCTTCGGGCTGGCTAGTATTTAAAGAGCTAGCCCCCATTTCACT
AATAAGATCTTGA
Protein sequenceShow/hide protein sequence
MELSVIGNGYHRHVLRTRLPTPSSVMASASHAVPRLKNNHSNSIAILPKEPQFLPDSPKGKLFNGGEKRHSKSYLERQSAIAQVKDCSELAPALARSCLVIPSGWLVFKE
LAPISLIRS