CuGenDBv2

Gene ID	Lsi03G013200
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	t-SNARE coiled-coil homology domain-containing protein
Genome location	chr03:24003646..24004574
RNA-Seq Expression	Lsi03G013200
Synteny	Lsi03G013200
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0006887 - exocytosis (biological process) GO:0006906 - vesicle fusion (biological process) GO:0048278 - vesicle docking (biological process) GO:0005802 - trans-Golgi network (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0009504 - cell plate (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0031201 - SNARE complex (cellular component) GO:0000149 - SNARE binding (molecular function) GO:0005484 - SNAP receptor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7018148.1 putative syntaxin [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-18

78.79

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++L DSFEIPRGQ SRGGDIELGTN PTS GD GL+DFFKKVQ+IEKQNEKLDRLLRKLQD+ +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

XP_022930594.1 syntaxin-132-like [Cucurbita moschata]

1.5e-18

78.79

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++L DSFEIPRGQ SRGGDIELGTN PTS GD GL+DFFKKVQ+IEKQNEKLDRLLRKLQD+ +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

XP_022980674.1 syntaxin-132-like [Cucurbita maxima]

1.5e-18

78.79

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++L DSFEIPRGQ SRGGDIELGTN PTS GD GL+DFFKKVQ+IEKQNEKLDRLLRKLQD+ +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

XP_038695044.1 syntaxin-132-like [Tripterygium wilfordii]

3.6e-17

77.78

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQD
        ++++L DSFEIPRGQ SRGGDIE+GTN P + GD GLEDFFKKVQEIEKQNEKLD+LL+KLQD
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQD

XP_038905131.1 syntaxin-132-like [Benincasa hispida]

2.3e-19

81.82

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Query:  LDNVLKDSFEIPRG-QLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++L DSFEIPRG Q SRGGDIELG+NVP SGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQD+ +
Subjt:  LDNVLKDSFEIPRG-QLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB6 syntaxin-132

7.3e-16

73.85

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++L DSFEIPRGQ SRGGDIELGTN P  G  G+ DFFKKVQEIEKQNEKLD LLRKLQD+ +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

A0A2P5BK18 t-SNARE

9.6e-16

74.6

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQD
        ++++L DSFEIPRGQ SR GD+ELGT  P + GD GLE FFKKVQEIEKQNEKLD+LLRKLQD
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQD

A0A6J1ERW7 syntaxin-132-like

7.1e-19

78.79

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++L DSFEIPRGQ SRGGDIELGTN PTS GD GL+DFFKKVQ+IEKQNEKLDRLLRKLQD+ +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

A0A6J1IZY0 syntaxin-132-like

7.1e-19

78.79

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++L DSFEIPRGQ SRGGDIELGTN PTS GD GL+DFFKKVQ+IEKQNEKLDRLLRKLQD+ +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

A0A7J6FCY3 t-SNARE coiled-coil homology domain-containing protein

1.2e-15

76.19

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQD
        ++++L DSFEIPRGQ SR GDIELGT  P + GD GLE FFKKVQEIEKQNEKLD+LLRKLQD
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQD

SwissProt top hits

e value

%identity

Alignment

Q8VZU2 Syntaxin-132

2.1e-12

60.61

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++LK SFE+PRGQ SR GD+ELG      GGD GLEDFFKKVQ I+KQ +KLD+LL+KLQ + +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

Q9SRV7 Putative syntaxin-131

4.6e-07

54.1

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQ
        ++++LK S E  R + +R  DIE G     SG  GL  FFKKVQEIEKQ EKLD+ L KLQ
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G03800.1 syntaxin of plants 131

3.3e-08

54.1

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQ
        ++++LK S E  R + +R  DIE G     SG  GL  FFKKVQEIEKQ EKLD+ L KLQ
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQ

AT5G08080.1 syntaxin of plants 132

1.5e-13

60.61

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++LK SFE+PRGQ SR GD+ELG      GGD GLEDFFKKVQ I+KQ +KLD+LL+KLQ + +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

AT5G08080.2 syntaxin of plants 132

1.5e-13

60.61

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED
        ++++LK SFE+PRGQ SR GD+ELG      GGD GLEDFFKKVQ I+KQ +KLD+LL+KLQ + +
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQDNED

AT5G08080.3 syntaxin of plants 132

5.2e-14

55.7

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Query:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQ--DNEDFELSCQRDQET
        ++++LK SFE+PRGQ SR GD+ELG      GGD GLEDFFKKVQ I+KQ +KLD+LL+KLQ  D+   +L C   +E+
Subjt:  LDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGD-GLEDFFKKVQEIEKQNEKLDRLLRKLQ--DNEDFELSCQRDQET

Sequences

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CDS sequence

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ATGGAACTTGATAATGTTTTGAAGGATTCCTTTGAGATTCCTCGGGGTCAACTTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGG
CTTGGAGGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGACAATGAAGATTTTGAATTATCTTGCCAAA
GGGATCAGGAGACAAATATGGAAAATGGTTCCAAAATCTCTTTAAAGCCCATAGACGTAGAGCAAGAGAGGAAAGGCAAGAAACCCATACAAGAAAATGAACCCCAGGAA
AGGTGA

mRNA sequence

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Protein sequence

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MELDNVLKDSFEIPRGQLSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDNEDFELSCQRDQETNMENGSKISLKPIDVEQERKGKKPIQENEPQE
R

Lsi03G013200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome