; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G013250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G013250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor DYT1
Genome locationchr03:24065296..24073062
RNA-Seq ExpressionLsi03G013250
SyntenyLsi03G013250
Gene Ontology termsGO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2689688.1 hypothetical protein I3760_09G150600 [Carya illinoinensis]3.9e-2946.93Show/hide
Query:  LDELRTIEEDIDGKSIMG-QCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKVV
        LDE   IEE       MG +    D+ TEYKSKNLHAERRRRQKLSD+LL LR  VP+ITNMNKATII+DAITYIQ+LQK V IL++QL ELE SS++V 
Subjt:  LDELRTIEEDIDGKSIMG-QCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKVV

Query:  LWPTPNDNIESTHLIK----------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
          P     +E+   +K                       + +++G    L++A+ S GFE I+++VTT KG ++V+S +
Subjt:  LWPTPNDNIESTHLIK----------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII

KAG7964044.1 hypothetical protein I3843_09G148800 [Carya illinoinensis]3.9e-2946.93Show/hide
Query:  LDELRTIEEDIDGKSIMG-QCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKVV
        LDE   IEE       MG +    D+ TEYKSKNLHAERRRRQKLSD+LL LR  VP+ITNMNKATII+DAITYIQ+LQK V IL++QL ELE SS++V 
Subjt:  LDELRTIEEDIDGKSIMG-QCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKVV

Query:  LWPTPNDNIESTHLIK----------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
          P     +E+   +K                       + +++G    L++A+ S GFE I+++VTT KG ++V+S +
Subjt:  LWPTPNDNIESTHLIK----------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII

XP_022146507.1 transcription factor DYT1, partial [Momordica charantia]1.7e-4058.47Show/hide
Query:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS
        +VG+  DELR IEE+    SI GQ R TDE  +YKSKNLHAERRRRQKLSD+LLLLR T      MNKATII+DAITYIQQLQ+ V+ILKDQLVELE SS
Subjt:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS

Query:  AKVVLWPTPNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIIN
         K + WPTP D     ++ ++Y+Q                     +KGA  KLIQ L S GFELID SVTTVKG V+VT+IIN
Subjt:  AKVVLWPTPNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIIN

XP_022930020.1 transcription factor DYT1 [Cucurbita moschata]7.9e-4661.41Show/hide
Query:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS
        Y   G D+LRT EE  D +SI  + RPTDE  EYKSKNLHAERRRRQKLSD+LLLLR TVPIITNMNKATII+DAITYI+QLQK VNILKDQLVELE S+
Subjt:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS

Query:  AKVVLWPT-PNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIIN
         K   WPT P D+   T   K Y+Q                     RKGA  KLIQA+ S+GFEL D+SVTTV+G V+VT++IN
Subjt:  AKVVLWPT-PNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIIN

XP_042943746.1 transcription factor DYT1-like [Carya illinoinensis]3.0e-2946.93Show/hide
Query:  LDELRTIEEDIDGKSIMG-QCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKVV
        LDE   IEE       MG +    D+ TEYKSKNLHAERRRRQKLSD+LL LR  VP+ITNMNKATII+DAITYIQ+LQK V IL++QL ELE SS++V 
Subjt:  LDELRTIEEDIDGKSIMG-QCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKVV

Query:  LWPTPNDNIESTHLIK----------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
          P     +E+   +K                       + +++G    L++A+ S GFE I+++VTT KG ++V+S +
Subjt:  LWPTPNDNIESTHLIK----------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII

TrEMBL top hitse value%identityAlignment
A0A251PGJ1 BHLH domain-containing protein2.0e-2644.57Show/hide
Query:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS
        +V   LDEL   E+   G  +  +    D+  EYKSKNLHAERRRRQKLS++LL LR  VP ITNMNKATI++DAITYI +LQKTVNILKDQL ++E S 
Subjt:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS

Query:  AKVVLWPTP-NDNIESTHLIKTY----------------------VQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
         +    P P  + I S   +K +                       +++G   KL++A+ + GFEL D+SVTT  G ++V+S +
Subjt:  AKVVLWPTP-NDNIESTHLIKTY----------------------VQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII

A0A5E4FTK1 BHLH domain-containing protein2.0e-2644.57Show/hide
Query:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS
        +V   LDEL   E+   G  +  +    D+  EYKSKNLHAERRRRQKLS++LL LR  VP ITNMNKATI++DAITYI +LQKTVNILKDQL ++E S 
Subjt:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS

Query:  AKVVLWPTP-NDNIESTHLIKTY----------------------VQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
         +    P P  + I S   +K +                       +++G   KL++A+ + GFEL D+SVTT  G ++V+S +
Subjt:  AKVVLWPTP-NDNIESTHLIKTY----------------------VQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII

A0A6J1CZR8 transcription factor DYT18.3e-4158.47Show/hide
Query:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS
        +VG+  DELR IEE+    SI GQ R TDE  +YKSKNLHAERRRRQKLSD+LLLLR T      MNKATII+DAITYIQQLQ+ V+ILKDQLVELE SS
Subjt:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS

Query:  AKVVLWPTPNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIIN
         K + WPTP D     ++ ++Y+Q                     +KGA  KLIQ L S GFELID SVTTVKG V+VT+IIN
Subjt:  AKVVLWPTPNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIIN

A0A6J1EVV3 transcription factor DYT13.8e-4661.41Show/hide
Query:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS
        Y   G D+LRT EE  D +SI  + RPTDE  EYKSKNLHAERRRRQKLSD+LLLLR TVPIITNMNKATII+DAITYI+QLQK VNILKDQLVELE S+
Subjt:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS

Query:  AKVVLWPT-PNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIIN
         K   WPT P D+   T   K Y+Q                     RKGA  KLIQA+ S+GFEL D+SVTTV+G V+VT++IN
Subjt:  AKVVLWPT-PNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIIN

A0A7N2LV27 BHLH domain-containing protein2.0e-2643.96Show/hide
Query:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS
        YVG  LD L   +E      +  +    D+ TEYKSKNLHAERRRRQKLSD+LL LR  VPIITNMNKATII+DAI+YI++L+  VN+L+  L E+E SS
Subjt:  YVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSS

Query:  AKVVLWPTPNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
         +  L P   +   +  + K+ +Q                     ++G   +LI+A+ + GFEL D+SVTT KG ++V+S +
Subjt:  AKVVLWPTPNDNIESTHLIKTYVQ---------------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII

SwissProt top hitse value%identityAlignment
E3SXU4 Basic helix-loop-helix protein A7.3e-1030.47Show/hide
Query:  IMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNIL--KDQLVELEDSSAKVVLWPTPNDNIESTHL
        + G+  P DE +   + ++ AERRRR+KL+++ ++LR  VP +T M+KA+I+ D I Y++QL++ +  L  +++ +E E S   V++ PT    +    +
Subjt:  IMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNIL--KDQLVELEDSSAKVVLWPTPNDNIESTHL

Query:  IKTYVQRKGALAKLIQALYSLGFELIDS
        ++      G  AK ++ + S+   +I+S
Subjt:  IKTYVQRKGALAKLIQALYSLGFELIDS

O81900 Transcription factor DYT13.4e-1533.94Show/hide
Query:  DEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKV---VLWPTPNDNIESTHL-------
        +E   +KS NL AERRRR+KL  +L+ LR  VPI+TNM KA+I++DAITYI +LQ  V  L +   E+E++  ++      P     +E++ L       
Subjt:  DEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKV---VLWPTPNDNIESTHL-------

Query:  -IKTYVQ-----------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIINKKK
         I+  VQ                 R G   K ++ +  LGFE+ID S+TT  G +++++ +  ++
Subjt:  -IKTYVQ-----------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIINKKK

Q2HIV9 Transcription factor bHLH351.4e-0830.43Show/hide
Query:  IEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSA----------
        +EE I G        P    +   SKN+ +ER RRQKL+ +L  LR  VP IT M+KA+II DAI+YI+ LQ     L+ ++ ELE +            
Subjt:  IEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSA----------

Query:  KVVLWPTPN------DNIESTHLIK------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
        + +L P  +      D+  ST LI+                  T  +R   + KL +   SL  +++ S++T+  G +  T  I
Subjt:  KVVLWPTPN------DNIESTHLIK------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII

Q9LPW3 Transcription factor SCREAM24.7e-0946.67Show/hide
Query:  SKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKV-VLWPTP
        +KNL AERRRR+KL+D+L +LR  VP I+ M++A+I+ DAI Y+++L + +N L  +L     SS+ +  L PTP
Subjt:  SKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKV-VLWPTP

Q9ZVX2 Transcription factor ABORTED MICROSPORES1.0e-0850.82Show/hide
Query:  KSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVE
        ++KNL AERRRR+KL+D+L  LR  VP IT +++A+I+ DAI Y+++LQ     L+D+L E
Subjt:  KSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVE

Arabidopsis top hitse value%identityAlignment
AT1G12860.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.3e-1046.67Show/hide
Query:  SKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKV-VLWPTP
        +KNL AERRRR+KL+D+L +LR  VP I+ M++A+I+ DAI Y+++L + +N L  +L     SS+ +  L PTP
Subjt:  SKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKV-VLWPTP

AT2G16910.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.4e-1050.82Show/hide
Query:  KSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVE
        ++KNL AERRRR+KL+D+L  LR  VP IT +++A+I+ DAI Y+++LQ     L+D+L E
Subjt:  KSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVE

AT4G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.4e-1633.94Show/hide
Query:  DEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKV---VLWPTPNDNIESTHL-------
        +E   +KS NL AERRRR+KL  +L+ LR  VPI+TNM KA+I++DAITYI +LQ  V  L +   E+E++  ++      P     +E++ L       
Subjt:  DEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSAKV---VLWPTPNDNIESTHL-------

Query:  -IKTYVQ-----------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIINKKK
         I+  VQ                 R G   K ++ +  LGFE+ID S+TT  G +++++ +  ++
Subjt:  -IKTYVQ-----------------RKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIINKKK

AT5G57150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein9.7e-1030.43Show/hide
Query:  IEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSA----------
        +EE I G        P    +   SKN+ +ER RRQKL+ +L  LR  VP IT M+KA+II DAI+YI+ LQ     L+ ++ ELE +            
Subjt:  IEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSA----------

Query:  KVVLWPTPN------DNIESTHLIK------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
        + +L P  +      D+  ST LI+                  T  +R   + KL +   SL  +++ S++T+  G +  T  I
Subjt:  KVVLWPTPN------DNIESTHLIK------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII

AT5G57150.3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein9.7e-1030.43Show/hide
Query:  IEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSA----------
        +EE I G        P    +   SKN+ +ER RRQKL+ +L  LR  VP IT M+KA+II DAI+YI+ LQ     L+ ++ ELE +            
Subjt:  IEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELEDSSA----------

Query:  KVVLWPTPN------DNIESTHLIK------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII
        + +L P  +      D+  ST LI+                  T  +R   + KL +   SL  +++ S++T+  G +  T  I
Subjt:  KVVLWPTPN------DNIESTHLIK------------------TYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAGACAATCAATATTCTCAACGACATGGCATTATGTTGGCTATGGACTTGATGAATTACGCACGATCGAAGAAGATATCGACGGCAAATCGATAATGGGCCAATG
TAGACCCACTGATGAATTCACTGAATACAAATCGAAGAACCTTCATGCAGAAAGACGACGGAGGCAGAAGCTTAGCGATAAGCTATTATTACTACGTGGCACTGTTCCGA
TCATCACAAATATGAATAAAGCAACCATTATCGACGATGCTATAACATACATCCAGCAGCTGCAGAAGACGGTTAACATTCTCAAAGACCAGCTTGTGGAATTGGAAGAT
TCATCTGCAAAAGTTGTCCTGTGGCCAACACCAAATGATAATATAGAATCGACACACTTAATTAAAACTTATGTTCAGCGAAAAGGGGCATTGGCTAAATTAATTCAAGC
ATTGTATTCTCTTGGCTTTGAACTCATTGATTCGAGTGTCACAACCGTAAAAGGAACCGTCATTGTAACCAGCATTATCAATAAAAAAAAGTTTAAGCCAAAATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAGACAATCAATATTCTCAACGACATGGCATTATGTTGGCTATGGACTTGATGAATTACGCACGATCGAAGAAGATATCGACGGCAAATCGATAATGGGCCAATG
TAGACCCACTGATGAATTCACTGAATACAAATCGAAGAACCTTCATGCAGAAAGACGACGGAGGCAGAAGCTTAGCGATAAGCTATTATTACTACGTGGCACTGTTCCGA
TCATCACAAATATGAATAAAGCAACCATTATCGACGATGCTATAACATACATCCAGCAGCTGCAGAAGACGGTTAACATTCTCAAAGACCAGCTTGTGGAATTGGAAGAT
TCATCTGCAAAAGTTGTCCTGTGGCCAACACCAAATGATAATATAGAATCGACACACTTAATTAAAACTTATGTTCAGCGAAAAGGGGCATTGGCTAAATTAATTCAAGC
ATTGTATTCTCTTGGCTTTGAACTCATTGATTCGAGTGTCACAACCGTAAAAGGAACCGTCATTGTAACCAGCATTATCAATAAAAAAAAGTTTAAGCCAAAATTATAA
Protein sequenceShow/hide protein sequence
MPRQSIFSTTWHYVGYGLDELRTIEEDIDGKSIMGQCRPTDEFTEYKSKNLHAERRRRQKLSDKLLLLRGTVPIITNMNKATIIDDAITYIQQLQKTVNILKDQLVELED
SSAKVVLWPTPNDNIESTHLIKTYVQRKGALAKLIQALYSLGFELIDSSVTTVKGTVIVTSIINKKKFKPKL