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Lsi03G013450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G013450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSGF29 C-terminal domain-containing protein
Genome locationchr03:24341164..24344244
RNA-Seq ExpressionLsi03G013450
SyntenyLsi03G013450
Gene Ontology termsGO:0000124 - SAGA complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152208.1 uncharacterized protein LOC111019983 [Momordica charantia]2.0e-2698.55Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSSLDIDGILVNTKELDRLRKE EVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

XP_022928184.1 uncharacterized protein LOC111435081 [Cucurbita moschata]5.1e-2798.55Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSSLDIDGILVNTKELDRLRKEQEVVV+EINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

XP_022989563.1 uncharacterized protein LOC111486624 [Cucurbita maxima]5.1e-2798.55Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSSLDIDGILVNTKELDRLRKEQEVVV+EINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

XP_038905992.1 SAGA-associated factor 29 homolog A isoform X1 [Benincasa hispida]4.4e-2695.65Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSS+DIDGIL NTKELDRLRKEQEVVV+EINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

XP_038905993.1 SAGA-associated factor 29 homolog A isoform X2 [Benincasa hispida]4.4e-2695.65Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSS+DIDGIL NTKELDRLRKEQEVVV+EINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

TrEMBL top hitse value%identityAlignment
A0A1S3CML7 uncharacterized protein LOC103502684 isoform X14.7e-2695.65Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSS DIDGIL NTKELDRLRKEQEVVV+EINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

A0A5D3D5D4 SAGA-associated factor 29-like protein4.7e-2695.65Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSS DIDGIL NTKELDRLRKEQEVVV+EINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

A0A6J1DE89 uncharacterized protein LOC1110199839.5e-2798.55Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSSLDIDGILVNTKELDRLRKE EVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

A0A6J1EK50 uncharacterized protein LOC1114350812.5e-2798.55Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSSLDIDGILVNTKELDRLRKEQEVVV+EINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

A0A6J1JQN7 uncharacterized protein LOC1114866242.5e-2798.55Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSSLDIDGILVNTKELDRLRKEQEVVV+EINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

SwissProt top hitse value%identityAlignment
Q500Z7 SAGA-associated factor 29 homolog B1.7e-2075.36Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSS DI GIL NTKELDRLRK+QE V++EINKMHKKL A+P++VEKPGD SL+KLK+LY QAK+LSE+E
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

Q8RXY6 SAGA-associated factor 29 homolog A4.4e-2179.41Show/hide
Query:  SSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        SS DI GIL NTKELDRLRKEQE V++EINKMHKKL ATP++VEKPGD SLSKLK+LY QAK+LSE E
Subjt:  SSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

Arabidopsis top hitse value%identityAlignment
AT3G27460.1 SGF29 tudor-like domain3.1e-2279.41Show/hide
Query:  SSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        SS DI GIL NTKELDRLRKEQE V++EINKMHKKL ATP++VEKPGD SLSKLK+LY QAK+LSE E
Subjt:  SSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

AT3G27460.2 SGF29 tudor-like domain3.1e-2279.41Show/hide
Query:  SSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        SS DI GIL NTKELDRLRKEQE V++EINKMHKKL ATP++VEKPGD SLSKLK+LY QAK+LSE E
Subjt:  SSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

AT5G40550.1 SGF29 tudor-like domain1.2e-2175.36Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSS DI GIL NTKELDRLRK+QE V++EINKMHKKL A+P++VEKPGD SL+KLK+LY QAK+LSE+E
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE

AT5G40550.2 SGF29 tudor-like domain1.2e-2175.36Show/hide
Query:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE
        MSS DI GIL NTKELDRLRK+QE V++EINKMHKKL A+P++VEKPGD SL+KLK+LY QAK+LSE+E
Subjt:  MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGCTCGACATTGACGGAATTTTGGTTAACACGAAGGAGCTCGATCGCCTGCGGAAGGAGCAGGAGGTTGTTGTTATTGAGATTAACAAGATGCACAAG
AAACTCCTCGCCACTCCTAAAGTGGTTGAGAAGCCTGGGGATAATTCATTGTCAAAACTGAAACATTTATATACTCAAGCAAAACAGCTTTCAGAGGATGAAAAA
TTTGGAGTTTCTATTCTTGAGGAAACAGCTTTATGGTTGCTGCAAATAGATTGTAGGAGAAAGGAAACTGACTTTTGTATTTGTTTGCTCGATATTTTCTCACCT
TCAAGGCACCATGGGGAAAGGATCTCATAG
mRNA sequenceShow/hide mRNA sequence
CGGTCATGCAATTCTCTCAGCTCCATCTCTCTCTCTCTAGAAACTTTGAAAAGAGGGCAAAAATAATTTTCAGTTGGAAAAAGGGCATTGAATGAGAAACCCAGA
AGCCCATTTTTCAGGTAGAATTACAATTTAGATTTTTTTTTCTTATTGTTCTTCTTCATTCAACAATTTGATCAGCGGTGGACACACCAAAAATTCGCAACTCCG
AACACTGAGCAATGTCGTCGCTCGACATTGACGGAATTTTGGTTAACACGAAGGAGCTCGATCGCCTGCGGAAGGAGCAGGAGGTTGTTGTTATTGAGATTAACA
AGATGCACAAGAAACTCCTCGCCACTCCTAAAGTGGTTGAGAAGCCTGGGGATAATTCATTGTCAAAACTGAAACATTTATATACTCAAGCAAAACAGCTTTCAG
AGGATGAAAAATTTGGAGTTTCTATTCTTGAGGAAACAGCTTTATGGTTGCTGCAAATAGATTGTAGGAGAAAGGAAACTGACTTTTGTATTTGTTTGCTCGATA
TTTTCTCACCTTCAAGGCACCATGGGGAAAGGATCTCATAG
Protein sequenceShow/hide protein sequence
MSSLDIDGILVNTKELDRLRKEQEVVVIEINKMHKKLLATPKVVEKPGDNSLSKLKHLYTQAKQLSEDEKFGVSILEETALWLLQIDCRRKETDFCICLLDIFSP
SRHHGERIS