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Lsi03G013930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G013930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAlpha-ketoglutarate-dependent dioxygenase AlkB
Genome locationchr03:24891747..24894557
RNA-Seq ExpressionLsi03G013930
SyntenyLsi03G013930
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER38546.1 alpha-ketoglutarate-dependent dioxygenase AlkB [Striga asiatica]5.0e-0848.53Show/hide
Query:  RPSVPAEAKTALRLIEGDHTSTLRCVDCFQHGYNLIHLWTLVGVSIPASLHYICKRARATPRNLWPQI
        R +  A+ KTA  LI+ +H+++ R VD FQH  N +H   LV   IP S H+ICKRARA  RN  PQ+
Subjt:  RPSVPAEAKTALRLIEGDHTSTLRCVDCFQHGYNLIHLWTLVGVSIPASLHYICKRARATPRNLWPQI
TrEMBL top hitse value%identityAlignment
A0A5A7Q0Y3 Alpha-ketoglutarate-dependent dioxygenase AlkB2.4e-0848.53Show/hide
Query:  RPSVPAEAKTALRLIEGDHTSTLRCVDCFQHGYNLIHLWTLVGVSIPASLHYICKRARATPRNLWPQI
        R +  A+ KTA  LI+ +H+++ R VD FQH  N +H   LV   IP S H+ICKRARA  RN  PQ+
Subjt:  RPSVPAEAKTALRLIEGDHTSTLRCVDCFQHGYNLIHLWTLVGVSIPASLHYICKRARATPRNLWPQI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCATTAAATAACTATGTAAATGTTAAACAAAACAGAAAGCAAACACGTTTAAGGCCCTCGGTACCTGCGGAAGCAAAAACAGCCTTGCGACTGATCGAGGGGGA
TCATACCTCCACCCTTCGATGTGTCGATTGCTTCCAACATGGTTACAACCTCATCCATCTCTGGACGCTTGTCGGGGTTAGCATCCCAGCATCGCTTCATTACATTTGCA
AGCGAGCTCGGGCAACACCGAGGAATCTCTGGCCTCAGATTCTGCAGTTAGAGAAATCGAGCTTTCATCTTCAGCTTATATGTGATGTATCCTTTCGACCTACCTGTCGG
ACAACAGCTGATGTCACTTCTGAGAAGCTAAGGTCGGGATACGGCATATCGCAGCAATACTGTATAGGGGATGCTGAGGAGAACCACAAAATTCAATATATACTAATCCA
TGCAAGGGAAGAAAAGAAATTGGAGTTCATTGCATGGTTTAATTCAAGGCTACTCAAGCATATACCTCTGGAGCCATATACCCAAGGGTTCCAGTCTCGCCAGTCATATC
ATTGGGATTTGAGGCCTCAACACGAGCAACGCCAAAGATTTCAGAGCACCTCCAGGACAATATTCAACAACAACACAACAAATATTGCTGGGCATGCCAATTTGGCCATT
TTCTGTTTATCTGAGGAGCCTATTGTTGCTCCTATAAACTGCACAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGCATTAAATAACTATGTAAATGTTAAACAAAACAGAAAGCAAACACGTTTAAGGCCCTCGGTACCTGCGGAAGCAAAAACAGCCTTGCGACTGATCGAGGGGGA
TCATACCTCCACCCTTCGATGTGTCGATTGCTTCCAACATGGTTACAACCTCATCCATCTCTGGACGCTTGTCGGGGTTAGCATCCCAGCATCGCTTCATTACATTTGCA
AGCGAGCTCGGGCAACACCGAGGAATCTCTGGCCTCAGATTCTGCAGTTAGAGAAATCGAGCTTTCATCTTCAGCTTATATGTGATGTATCCTTTCGACCTACCTGTCGG
ACAACAGCTGATGTCACTTCTGAGAAGCTAAGGTCGGGATACGGCATATCGCAGCAATACTGTATAGGGGATGCTGAGGAGAACCACAAAATTCAATATATACTAATCCA
TGCAAGGGAAGAAAAGAAATTGGAGTTCATTGCATGGTTTAATTCAAGGCTACTCAAGCATATACCTCTGGAGCCATATACCCAAGGGTTCCAGTCTCGCCAGTCATATC
ATTGGGATTTGAGGCCTCAACACGAGCAACGCCAAAGATTTCAGAGCACCTCCAGGACAATATTCAACAACAACACAACAAATATTGCTGGGCATGCCAATTTGGCCATT
TTCTGTTTATCTGAGGAGCCTATTGTTGCTCCTATAAACTGCACAAGTTGA
Protein sequenceShow/hide protein sequence
MTALNNYVNVKQNRKQTRLRPSVPAEAKTALRLIEGDHTSTLRCVDCFQHGYNLIHLWTLVGVSIPASLHYICKRARATPRNLWPQILQLEKSSFHLQLICDVSFRPTCR
TTADVTSEKLRSGYGISQQYCIGDAEENHKIQYILIHAREEKKLEFIAWFNSRLLKHIPLEPYTQGFQSRQSYHWDLRPQHEQRQRFQSTSRTIFNNNTTNIAGHANLAI
FCLSEEPIVAPINCTS