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Lsi03G013960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G013960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box domain-containing protein
Genome locationchr03:24911920..24913012
RNA-Seq ExpressionLsi03G013960
SyntenyLsi03G013960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN59658.1 hypothetical protein Csa_001357 [Cucumis sativus]6.4e-2762.39Show/hide
Query:  KFYCIDFDPKSLKEG-KSCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSV---CGKGK--TRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSP
        K YCIDFD K LKEG K+CIV SFTFHPRF  FK+VNSCNGLFC VNT+ +   C K     +Q  AIILNPMTNE  EL LNN++  + G  +GFG+SP
Subjt:  KFYCIDFDPKSLKEG-KSCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSV---CGKGK--TRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSP

Query:  NTKHYKITK
        N K YKI K
Subjt:  NTKHYKITK

KGN59660.1 hypothetical protein Csa_001105 [Cucumis sativus]6.0e-2557.8Show/hide
Query:  YCIDFDPKSLKEGK-SCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSVCGKG-----KTRQTFAIILNPMTNECVELPLNNA--MNIHSGYIYGFGFSP
        +CIDFD K+LKE K +CIV SFTFHP FS FKI+NSCNGL C VN++ +  +      +  Q FAIIL+P+TNE VELPLN+A     ++GY +GFG+SP
Subjt:  YCIDFDPKSLKEGK-SCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSVCGKG-----KTRQTFAIILNPMTNECVELPLNNA--MNIHSGYIYGFGFSP

Query:  NTKHYKITK
        N K YKI K
Subjt:  NTKHYKITK

XP_022143297.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]3.8e-1140.91Show/hide
Query:  CIDFDPKSLKEGKSCIVASFTFHPRF----SKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHY
        C+  DPK L  G  C VA F FHP F    +   IVN CNGL C                   ILNPMTNE  + P++NA      Y Y FGFSP TK Y
Subjt:  CIDFDPKSLKEGKSCIVASFTFHPRF----SKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHY

Query:  KITKEIEALD
        K+ +   + D
Subjt:  KITKEIEALD

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]4.9e-1144.34Show/hide
Query:  YCIDFDPKSLKEGKSCIVASFTFHPRFS----KFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELP-LNNAMNIHSGYIYGFGFSPNTK
        +C+D DP+ L EG S  VASFTFHP  S    K  I+NSC+GL  L+ T+    +   R     +LNPMTNE  +LP   +  +    Y YG GFSP TK
Subjt:  YCIDFDPKSLKEGKSCIVASFTFHPRFS----KFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELP-LNNAMNIHSGYIYGFGFSPNTK

Query:  HYKITK
         YK+ +
Subjt:  HYKITK

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]6.4e-1145.28Show/hide
Query:  YCIDFDPKSLKEGKSCIVASFTFHPRF--SKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMN---IHSGYIYGFGFSPNTK
        YC+DF+ K L EG S +V SFTFHP+F  S   I+NSCNGL  L+ ++     G        ILNPMTNE  + P   +         Y YG GFSP TK
Subjt:  YCIDFDPKSLKEGKSCIVASFTFHPRF--SKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMN---IHSGYIYGFGFSPNTK

Query:  HYKITK
         YKI +
Subjt:  HYKITK

TrEMBL top hitse value%identityAlignment
A0A0A0LCB8 F-box domain-containing protein2.9e-2557.8Show/hide
Query:  YCIDFDPKSLKEGK-SCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSVCGKG-----KTRQTFAIILNPMTNECVELPLNNA--MNIHSGYIYGFGFSP
        +CIDFD K+LKE K +CIV SFTFHP FS FKI+NSCNGL C VN++ +  +      +  Q FAIIL+P+TNE VELPLN+A     ++GY +GFG+SP
Subjt:  YCIDFDPKSLKEGK-SCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSVCGKG-----KTRQTFAIILNPMTNECVELPLNNA--MNIHSGYIYGFGFSP

Query:  NTKHYKITK
        N K YKI K
Subjt:  NTKHYKITK

A0A0A0LCZ3 F-box domain-containing protein3.1e-2762.39Show/hide
Query:  KFYCIDFDPKSLKEG-KSCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSV---CGKGK--TRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSP
        K YCIDFD K LKEG K+CIV SFTFHPRF  FK+VNSCNGLFC VNT+ +   C K     +Q  AIILNPMTNE  EL LNN++  + G  +GFG+SP
Subjt:  KFYCIDFDPKSLKEG-KSCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSV---CGKGK--TRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSP

Query:  NTKHYKITK
        N K YKI K
Subjt:  NTKHYKITK

A0A5D3BIH1 F-box/LRR-repeat protein2.2e-0939.05Show/hide
Query:  KFYCIDFDPKSLKEGKSCIVASFTFHPRFSKFK--IVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKH
        + +C+D +P +  EG + +V SF  HP +S     IVN CNGL C++N + V            ILNPMTNE +ELP   +   +   +YG G+SP TK 
Subjt:  KFYCIDFDPKSLKEGKSCIVASFTFHPRFSKFK--IVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKH

Query:  YKITK
        YK+ +
Subjt:  YKITK

A0A6J1BS93 F-box protein At3g07870-like1.7e-0940.17Show/hide
Query:  KFYCIDFDPKSLKEGKSCIVASFTFHP-RFSK--FKIVNSCNGLFCLVNTQSVCGKGKTRQTFA-----IILNPMTNECVELPLNNAMNIHSGYIYGFGF
        K  C+D DPK L  G    + SF+FHP  FS     I+NSCNGL C           K ++T+       ILNPMTNE + +P++        Y YG GF
Subjt:  KFYCIDFDPKSLKEGKSCIVASFTFHP-RFSK--FKIVNSCNGLFCLVNTQSVCGKGKTRQTFA-----IILNPMTNECVELPLNNAMNIHSGYIYGFGF

Query:  SPNTKHYKITKEIEALD
        SP TK YK+ +  E  D
Subjt:  SPNTKHYKITKEIEALD

A0A6J1CQE2 F-box/kelch-repeat protein At3g06240-like1.8e-1140.91Show/hide
Query:  CIDFDPKSLKEGKSCIVASFTFHPRF----SKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHY
        C+  DPK L  G  C VA F FHP F    +   IVN CNGL C                   ILNPMTNE  + P++NA      Y Y FGFSP TK Y
Subjt:  CIDFDPKSLKEGKSCIVASFTFHPRF----SKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHY

Query:  KITKEIEALD
        K+ +   + D
Subjt:  KITKEIEALD

SwissProt top hitse value%identityAlignment
Q9SFC7 F-box protein At3g078701.2e-0429.25Show/hide
Query:  KEGKSCIVASFT--FHPRFSKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHYKITKEIEALDD
        +E K      FT  F     +F +V SCNGL CL ++               + NP T   +ELP  +        ++GFGF   TK YK+ K +     
Subjt:  KEGKSCIVASFT--FHPRFSKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHYKITKEIEALDD

Query:  KLNHDG
          N++G
Subjt:  KLNHDG

Arabidopsis top hitse value%identityAlignment
AT3G07870.1 F-box and associated interaction domains-containing protein8.7e-0629.25Show/hide
Query:  KEGKSCIVASFT--FHPRFSKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHYKITKEIEALDD
        +E K      FT  F     +F +V SCNGL CL ++               + NP T   +ELP  +        ++GFGF   TK YK+ K +     
Subjt:  KEGKSCIVASFT--FHPRFSKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHYKITKEIEALDD

Query:  KLNHDG
          N++G
Subjt:  KLNHDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTTTTATTGTATTGACTTTGATCCCAAATCTTTAAAAGAAGGGAAGAGCTGTATTGTTGCTTCATTTACCTTCCATCCCCGTTTCTCTAAATTCAAAATTGTCAATTC
TTGTAATGGACTCTTTTGTTTGGTGAACACACAAAGTGTATGTGGAAAAGGAAAAACGAGGCAAACTTTCGCTATCATATTAAATCCGATGACAAATGAGTGTGTGGAAC
TTCCACTTAATAATGCTATGAATATTCACTCCGGCTATATCTATGGATTTGGTTTTAGCCCTAACACAAAACACTACAAAATAACCAAGGAGATAGAAGCATTGGATGAT
AAACTAAATCATGACGGAAAATTATGGATTTATCAAATTGATTCACTCAATTTTGGTTCTCTTCGAAAGACTTTGGGAATAATTACTTTATTTCATTAG
mRNA sequenceShow/hide mRNA sequence
AAGTTTTATTGTATTGACTTTGATCCCAAATCTTTAAAAGAAGGGAAGAGCTGTATTGTTGCTTCATTTACCTTCCATCCCCGTTTCTCTAAATTCAAAATTGTCAATTC
TTGTAATGGACTCTTTTGTTTGGTGAACACACAAAGTGTATGTGGAAAAGGAAAAACGAGGCAAACTTTCGCTATCATATTAAATCCGATGACAAATGAGTGTGTGGAAC
TTCCACTTAATAATGCTATGAATATTCACTCCGGCTATATCTATGGATTTGGTTTTAGCCCTAACACAAAACACTACAAAATAACCAAGGAGATAGAAGCATTGGATGAT
AAACTAAATCATGACGGAAAATTATGGATTTATCAAATTGATTCACTCAATTTTGGTTCTCTTCGAAAGACTTTGGGAATAATTACTTTATTTCATTAG
Protein sequenceShow/hide protein sequence
KFYCIDFDPKSLKEGKSCIVASFTFHPRFSKFKIVNSCNGLFCLVNTQSVCGKGKTRQTFAIILNPMTNECVELPLNNAMNIHSGYIYGFGFSPNTKHYKITKEIEALDD
KLNHDGKLWIYQIDSLNFGSLRKTLGIITLFH