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Lsi03G014310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G014310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr03:25264482..25268479
RNA-Seq ExpressionLsi03G014310
SyntenyLsi03G014310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV80830.1 hypothetical protein CFOL_v3_24290 [Cephalotus follicularis]2.2e-1450.46Show/hide
Query:  ILSGTNDDDDA----FFIIANLLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMP
        +LSGT    D+    F  I++L  S  AA  +AM +RNIP+PI C+T++P       RV+GI+TLSYNG+R I + V+AL  VAGGI K  P+F  I MP
Subjt:  ILSGTNDDDDA----FFIIANLLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMP

Query:  CLVKKVAGC
        C VKKV GC
Subjt:  CLVKKVAGC

KAB8094250.1 hypothetical protein EE612_021375 [Oryza sativa]8.2e-0938.46Show/hide
Query:  NDDDDAFFIIANLLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGC
        N D DA   +     ST AA  MA +   +P P+    + P S PV+RR  G RTLSY     IM +       AGG +K  PM RSI +PCL+KKV  C
Subjt:  NDDDDAFFIIANLLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGC

Query:  WKITANIRSIVQIGNSRRTSFTLSGTHTLS
          +  N     Q+G    TSF  S   T++
Subjt:  WKITANIRSIVQIGNSRRTSFTLSGTHTLS

KAG5560856.1 hypothetical protein RHGRI_004015 [Rhododendron griersonianum]3.8e-0660.34Show/hide
Query:  RNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMF
        R +P PILC+TVMPFS  V  R  G++  SY G+RRIME V+AL  VAGGILK   MF
Subjt:  RNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMF

RHN68322.1 hypothetical protein MtrunA17_Chr3g0112641 [Medicago truncatula]1.6e-0434.78Show/hide
Query:  MVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWKITANIRSIVQIGNSRRTSF---
        M E   PM IL   +MP S PV   +IG RTLSY G    + I +      GGI+K +  F+ I   C  K V  C K+   +     +G   RTSF   
Subjt:  MVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWKITANIRSIVQIGNSRRTSF---

Query:  ---TLSGTHTLSLGI
           T++  H L  G+
Subjt:  ---TLSGTHTLSLGI

TrEMBL top hitse value%identityAlignment
A0A0P0W5K2 Os03g0823550 protein4.0e-0938.46Show/hide
Query:  NDDDDAFFIIANLLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGC
        N D DA   +     ST AA  MA +   +P P+    + P S PV+RR  G RTLSY     IM +       AGG +K  PM RSI +PCL+KKV  C
Subjt:  NDDDDAFFIIANLLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGC

Query:  WKITANIRSIVQIGNSRRTSFTLSGTHTLS
          +  N     Q+G    TSF  S   T++
Subjt:  WKITANIRSIVQIGNSRRTSFTLSGTHTLS

A0A1Q3CKQ5 Uncharacterized protein1.1e-1450.46Show/hide
Query:  ILSGTNDDDDA----FFIIANLLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMP
        +LSGT    D+    F  I++L  S  AA  +AM +RNIP+PI C+T++P       RV+GI+TLSYNG+R I + V+AL  VAGGI K  P+F  I MP
Subjt:  ILSGTNDDDDA----FFIIANLLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMP

Query:  CLVKKVAGC
        C VKKV GC
Subjt:  CLVKKVAGC

A0A2Z6PEQ6 Uncharacterized protein8.5e-0444.44Show/hide
Query:  GIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWK------ITANIRSIVQIGNSRRTSFTLSGT
        G ++ SY G    ME V  L R A GILKS P F S V+PCL K+V  C +      +T++IRSI +I  +  T FT+ GT
Subjt:  GIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWK------ITANIRSIVQIGNSRRTSFTLSGT

A0A396IRW7 Uncharacterized protein7.7e-0534.78Show/hide
Query:  MVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWKITANIRSIVQIGNSRRTSF---
        M E   PM IL   +MP S PV   +IG RTLSY G    + I +      GGI+K +  F+ I   C  K V  C K+   +     +G   RTSF   
Subjt:  MVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWKITANIRSIVQIGNSRRTSF---

Query:  ---TLSGTHTLSLGI
           T++  H L  G+
Subjt:  ---TLSGTHTLSLGI

A0A7C9CFE1 Uncharacterized protein1.2e-0539.29Show/hide
Query:  LLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWKITANIRSIVQ
        LL STRAA  MA +ER  P+PILC   MP S  V  R  G+ T SY G   +M  +    R AGGIL+  P   SI   C  +KV    K    +  + +
Subjt:  LLASTRAARIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWKITANIRSIVQ

Query:  IGNSRRTSFTLS
        +G   +T  T S
Subjt:  IGNSRRTSFTLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCATACTCCTCCAATAACCTTCGATAGGAACGAGAAGATCAATAGCATGAATGGCCGTGCGAATAAAAAGGACTACATTGAAGCTTCTCTCATGTCGTCGGAAAA
CCAGTTCGGTTTCCCCTCCATACTCGTCAATAACTCCACGACCGATATCATTATCGCACTGCAAAAGCTCCCAACACCGAACACGCTGTTGTACAACGCAAACCCTGTCG
TTCTCATGCTCACTGGAACCTCTGAGAGCCAGAAGATACTAAGCGGCACAAACGACGACGACGATGCATTTTTCATCATTGCCAACCTCTTGGCTTCGACAAGGGCAGCG
AGGATCATGGCGATGGTGGAGAGGAACATTCCAATGCCCATCCTTTGCATGACAGTGATGCCCTTCTCGGCACCAGTAAAGAGACGGGTGATCGGGATCAGAACTTTGTC
GTATAACGGCATGAGGAGGATTATGGAGATTGTGATGGCGCTCTGGAGGGTGGCGGGAGGGATCTTGAAATCGGCGCCAATGTTCCGCTCCATTGTCATGCCTTGCTTGG
TGAAGAAGGTAGCTGGTTGTTGGAAGATCACAGCAAACATTAGAAGCATTGTCCAAATTGGTAATAGCCGCAGAACCAGTTTCACTTTGTCCGGCACACACACTCTTTCT
CTTGGAATCATGATGATGTTTTTGTCAACCATGGCTTTCATTGCTCCTGAGCTTTCATGGCAGAGTGGCTTGCTCTCTTGCAGCCTGCGAATCACATATAACAATCAGCT
TCATATTCATCTTTCAGCGATAAATTCTAGTGCCACAAGCAAACAGAGCAACAGAAGAAATCATGACACACATGGGAATGGCAAACCCAAGTACCCAACCAAAGTTGTCT
TGAATGTACGACATCACTGTCACACCAAGGAGGCTGCCACTGCATACTCCAAAGTACCACCATTGGAAGAACAAGCTCTTTTTCTTCGGCTTCTCGTCCAACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCATACTCCTCCAATAACCTTCGATAGGAACGAGAAGATCAATAGCATGAATGGCCGTGCGAATAAAAAGGACTACATTGAAGCTTCTCTCATGTCGTCGGAAAA
CCAGTTCGGTTTCCCCTCCATACTCGTCAATAACTCCACGACCGATATCATTATCGCACTGCAAAAGCTCCCAACACCGAACACGCTGTTGTACAACGCAAACCCTGTCG
TTCTCATGCTCACTGGAACCTCTGAGAGCCAGAAGATACTAAGCGGCACAAACGACGACGACGATGCATTTTTCATCATTGCCAACCTCTTGGCTTCGACAAGGGCAGCG
AGGATCATGGCGATGGTGGAGAGGAACATTCCAATGCCCATCCTTTGCATGACAGTGATGCCCTTCTCGGCACCAGTAAAGAGACGGGTGATCGGGATCAGAACTTTGTC
GTATAACGGCATGAGGAGGATTATGGAGATTGTGATGGCGCTCTGGAGGGTGGCGGGAGGGATCTTGAAATCGGCGCCAATGTTCCGCTCCATTGTCATGCCTTGCTTGG
TGAAGAAGGTAGCTGGTTGTTGGAAGATCACAGCAAACATTAGAAGCATTGTCCAAATTGGTAATAGCCGCAGAACCAGTTTCACTTTGTCCGGCACACACACTCTTTCT
CTTGGAATCATGATGATGTTTTTGTCAACCATGGCTTTCATTGCTCCTGAGCTTTCATGGCAGAGTGGCTTGCTCTCTTGCAGCCTGCGAATCACATATAACAATCAGCT
TCATATTCATCTTTCAGCGATAAATTCTAGTGCCACAAGCAAACAGAGCAACAGAAGAAATCATGACACACATGGGAATGGCAAACCCAAGTACCCAACCAAAGTTGTCT
TGAATGTACGACATCACTGTCACACCAAGGAGGCTGCCACTGCATACTCCAAAGTACCACCATTGGAAGAACAAGCTCTTTTTCTTCGGCTTCTCGTCCAACGATGA
Protein sequenceShow/hide protein sequence
MPHTPPITFDRNEKINSMNGRANKKDYIEASLMSSENQFGFPSILVNNSTTDIIIALQKLPTPNTLLYNANPVVLMLTGTSESQKILSGTNDDDDAFFIIANLLASTRAA
RIMAMVERNIPMPILCMTVMPFSAPVKRRVIGIRTLSYNGMRRIMEIVMALWRVAGGILKSAPMFRSIVMPCLVKKVAGCWKITANIRSIVQIGNSRRTSFTLSGTHTLS
LGIMMMFLSTMAFIAPELSWQSGLLSCSLRITYNNQLHIHLSAINSSATSKQSNRRNHDTHGNGKPKYPTKVVLNVRHHCHTKEAATAYSKVPPLEEQALFLRLLVQR