CuGenDBv2

Gene ID	Lsi03G014730
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cullin-3
Genome location	chr03:25619192..25619437
RNA-Seq Expression	Lsi03G014730
Synteny	Lsi03G014730
Gene Ontology terms	GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0031461 - cullin-RING ubiquitin ligase complex (cellular component) GO:0004842 - ubiquitin-protein transferase activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0031625 - ubiquitin protein ligase binding (molecular function)
InterPro domains	IPR016159 - Cullin repeat-like-containing domain superfamily IPR045093 - Cullin

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053753.1 Cullin-3 [Cucumis melo var. makuwa]

1.3e-27

95.77

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLP--LLFISLVYYTML
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLP  LLFISL+YYTML
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLP--LLFISLVYYTML

KAE9466562.1 hypothetical protein C3L33_01524, partial [Rhododendron williamsianum]

2.7e-22

94.92

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLPLL
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR   LL
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLPLL

XP_019224846.1 PREDICTED: cullin-3A-like [Nicotiana attenuata]

4.6e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

XP_022930444.1 cullin-3A-like [Cucurbita moschata]

4.6e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

XP_022970588.1 cullin-3A-like [Cucurbita maxima]

4.6e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

TrEMBL top hits

e value

%identity

Alignment

A0A5D3DQV3 Cullin-3

6.1e-28

95.77

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLP--LLFISLVYYTML
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLP  LLFISL+YYTML
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLP--LLFISLVYYTML

A0A6A4MBG3 CULLIN_2 domain-containing protein (Fragment)

1.3e-22

94.92

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLPLL
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR   LL
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLPLL

A0A6J1I399 cullin-3A-like

2.2e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

A0A6J5WZL7 CULLIN_2 domain-containing protein

2.2e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

M5X9N4 CULLIN_2 domain-containing protein

2.2e-22

100

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

SwissProt top hits

e value

%identity

Alignment

Q54NZ5 Cullin-3

6.3e-06

53.85

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Query:  HRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        H V+ DP + ++TWK+L+ A+ +I+  NAS LSFEELYR
Subjt:  HRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Q6DE95 Cullin-3-A

1.2e-04

46.15

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Query:  AQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        ++K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYR
Subjt:  AQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Q6GPF3 Cullin-3-B

1.2e-04

46.15

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Query:  AQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        ++K    +I AF   + +D KY    W +L++AI EI   N SGLSFEELYR
Subjt:  AQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Q9C9L0 Cullin-3B

5.7e-23

94.44

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MS QKKRNFQIEAFK RVVVDPKYA+KTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Q9ZVH4 Cullin-3A

1.2e-20

87.04

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MS QKKRNFQIEAFKHRVVVDPKYA+KTW+ILE AIH+IYN +ASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Arabidopsis top hits

e value

%identity

Alignment

AT1G26830.1 cullin 3

8.4e-22

87.04

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MS QKKRNFQIEAFKHRVVVDPKYA+KTW+ILE AIH+IYN +ASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

AT1G69670.1 cullin 3B

4.0e-24

94.44

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Query:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR
        MS QKKRNFQIEAFK RVVVDPKYA+KTWKILEHAIHEIYNHNASGLSFEELYR
Subjt:  MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYR

Sequences

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CDS sequence

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ATGAGTGCGCAGAAGAAGAGGAATTTCCAGATAGAGGCCTTTAAACACCGGGTCGTGGTGGATCCCAAATATGCTGAGAAGACGTGGAAGATTTTGGAACATGCAATTCA
CGAGATTTACAATCATAACGCTAGCGGCCTCAGCTTCGAAGAGCTTTACAGGTTGCTTCCGCTCCTTTTCATTTCACTGGTATACTACACCATGTTATTTCCTTCTCTCT
TTGCTGCAACTATTCGATGGAACTAG

mRNA sequence

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Protein sequence

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MSAQKKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRLLPLLFISLVYYTMLFPSLFAATIRWN

Lsi03G014730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome