; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G014870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G014870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionribonuclease MC-like
Genome locationchr03:25911950..25913318
RNA-Seq ExpressionLsi03G014870
SyntenyLsi03G014870
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR033130 - Ribonuclease T2, His active site 2
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEM42996.1 S-RNase [Siraitia grosvenorii]4.9e-3852.52Show/hide
Query:  VKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDH
        + +L+P +SE+W NII G+N WLW HEWDKHGTC E++L DQ  YF +AM+T   +N   +L NS I P  +  Y+ D++  AIRAKTGK PA+ CNY+ 
Subjt:  VKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDH

Query:  WTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWY
        WT  +Q+HE+S C   D S  VDCP NANKC+ Y  +WY
Subjt:  WTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWY

XP_022149793.1 ribonuclease MC-like [Momordica charantia]3.3e-3453.33Show/hide
Query:  LEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTS
        L+P +SE+W N+ TGDN WLW+HEWDKHGTC E    DQ  YF + M+   + N + IL N+ I P     YT D++  AIRAKTGK PA+ CNY+  T 
Subjt:  LEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTS

Query:  YEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMW
          QLHEIS C  +D S F DCP NANKC G S +W
Subjt:  YEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMW

XP_022158939.1 ribonuclease MC-like [Momordica charantia]6.5e-2239.26Show/hide
Query:  LVKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYD
        ++  ++ RL + W N+ITG N   W +EW KHGTC     L+Q  YF + +     ++ + IL   GI+P  +  YT   ++NAI + TGK PA+ CN +
Subjt:  LVKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYD

Query:  HWTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGY
        + T   QLHEIS C +++G   +DCP N   CN Y
Subjt:  HWTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGY

XP_038903744.1 ribonuclease MC-like [Benincasa hispida]6.7e-3550Show/hide
Query:  VKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDH
        + +L+P +SE+W N++TG NQWLW HEWDKHGTC E +L DQ  YF + M+     N   IL  S I P  +  Y+  +I  AI AKTGK PA+ CNY++
Subjt:  VKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDH

Query:  WTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYP
        W+  EQLHEI+ C   + + F DCP NANKC+  + MWYP
Subjt:  WTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYP

XP_038904516.1 ribonuclease MC-like [Benincasa hispida]1.7e-7583.11Show/hide
Query:  KPNVLVKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAIS
        + N  VKVLEPRL+EMWGN+ITGDNQWLWK EWDKHGTCIED+L DQSGYFEY MNTLYYFNPEEILKN GIWPTQEGYYTLDEIK+ I+A+TGKLPA+ 
Subjt:  KPNVLVKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAIS

Query:  CNYDHWTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYPSPY
        CNY+HWTSY+QLHEISYC T++G TFVDCPSNANKCNG+SAMWYP PY
Subjt:  CNYDHWTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYPSPY

TrEMBL top hitse value%identityAlignment
A0A175YIT6 RING-type domain-containing protein3.8e-2039.29Show/hide
Query:  LEPRLSEMWGNII--TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHW
        LE RL + W ++   + D    W HEWDKHGTC E   LDQ  YF+ A++     N  + L N+GI P    YY+L+ IK+AI+  TG  P I CN D  
Subjt:  LEPRLSEMWGNII--TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHW

Query:  TSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYPS
          Y QL+++  C    GS F++CP   +  +  S + +PS
Subjt:  TSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYPS

A0A6J1D7Q5 ribonuclease MC-like1.6e-3453.33Show/hide
Query:  LEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTS
        L+P +SE+W N+ TGDN WLW+HEWDKHGTC E    DQ  YF + M+   + N + IL N+ I P     YT D++  AIRAKTGK PA+ CNY+  T 
Subjt:  LEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTS

Query:  YEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMW
          QLHEIS C  +D S F DCP NANKC G S +W
Subjt:  YEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMW

A0A6J1E0X1 ribonuclease MC-like3.1e-2239.26Show/hide
Query:  LVKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYD
        ++  ++ RL + W N+ITG N   W +EW KHGTC     L+Q  YF + +     ++ + IL   GI+P  +  YT   ++NAI + TGK PA+ CN +
Subjt:  LVKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYD

Query:  HWTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGY
        + T   QLHEIS C +++G   +DCP N   CN Y
Subjt:  HWTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGY

A0A6J1E266 ribonuclease MC-like8.5e-2037.14Show/hide
Query:  VKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDH
        +  +  RL+  W ++I G N  LW HEW  HGTC     L Q  YF + ++T   ++    L    I+P+ E  Y+   I NAIR  T KLP + CN + 
Subjt:  VKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDH

Query:  WTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYP
        ++   QLHEI  C  +     +DCPSN   C  Y   WYP
Subjt:  WTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYP

K7NBR4 S-RNase2.4e-3852.52Show/hide
Query:  VKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDH
        + +L+P +SE+W NII G+N WLW HEWDKHGTC E++L DQ  YF +AM+T   +N   +L NS I P  +  Y+ D++  AIRAKTGK PA+ CNY+ 
Subjt:  VKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDH

Query:  WTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWY
        WT  +Q+HE+S C   D S  VDCP NANKC+ Y  +WY
Subjt:  WTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWY

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC1.6e-1533.06Show/hide
Query:  LEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTS
        L+ +L+ +W N++  +NQ  W HEW KHGTC E    +Q+ YF+ A++    ++    L+     P      +   IK  ++AK GK P + C  D  T 
Subjt:  LEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTS

Query:  YEQLHEISYCTTRDGSTFVDC
           L ++  C  +DGST +DC
Subjt:  YEQLHEISYCTTRDGSTFVDC

P42813 Ribonuclease 11.8e-1435.78Show/hide
Query:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR
        +G  +  W+HEW+KHGTC E  ++DQ  YF+ A+N     N    L  +GI P  +  Y+L+ I+++I+   G  P + CN D  +   QL+++  C  R
Subjt:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR

Query:  DGSTFVDCP
         GS  ++CP
Subjt:  DGSTFVDCP

P42815 Ribonuclease 31.8e-1437.61Show/hide
Query:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR
        + D    W HEW+KHGTC E   LDQ  YFE  +      N    L N+GI P  + +Y + +I+N I+   G  P I CN D  +   QL++I  C   
Subjt:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR

Query:  DGSTFVDCP
          S F++CP
Subjt:  DGSTFVDCP

P80022 Extracellular ribonuclease LE7.2e-1636.7Show/hide
Query:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR
        +G     W HEW+KHGTC E +L +Q  YF+ A++     +   IL+ + I P  E  Y L  I+NAI++  G  P I CN D  +   QL+++  C   
Subjt:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR

Query:  DGSTFVDCP
         GS+ ++CP
Subjt:  DGSTFVDCP

P80196 Intracellular ribonuclease LX8.0e-1536.22Show/hide
Query:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR
        + D    W HEW KHGTC     L+Q  YF+ A++     N  + L N+GI P    YY ++ IK AI    G  P I CN D   ++ QL+++  C   
Subjt:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR

Query:  DGSTFVDCP--SNANKCNGYSAMWYPS
          S F+DCP   +  KC   S + +PS
Subjt:  DGSTFVDCP--SNANKCNGYSAMWYPS

Arabidopsis top hitse value%identityAlignment
AT1G14210.1 Ribonuclease T2 family protein1.0e-1737.78Show/hide
Query:  YTMVKPNVLVKVLEPRLSEMWGNIITGDNQW-LWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGK
        + + K + LV  +E + +E WG      N+  LW+HEW+KHGTC++  + DQ  YF   +   +  +   IL   GI P  +G+Y+LDEIKNAI+   G 
Subjt:  YTMVKPNVLVKVLEPRLSEMWGNIITGDNQW-LWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGK

Query:  LPAISCNYDHWTSYEQLHEISYCTTRDGSTFVDCP
         P I CN D     +QL +I  C       FV+CP
Subjt:  LPAISCNYDHWTSYEQLHEISYCTTRDGSTFVDCP

AT1G14220.1 Ribonuclease T2 family protein1.3e-2042.5Show/hide
Query:  LSEMWGNIITGDNQW--LWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYE
        L + W  +    N+    W+HEW+KHGTC E  ++DQ  YFE A+      N  +ILKNSGI P  +G+Y LD+I NAI+   G  P I CN D   +  
Subjt:  LSEMWGNIITGDNQW--LWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYE

Query:  QLHEISYCTTRDGSTFVDCP
        QLH+I  C    G+ F++CP
Subjt:  QLHEISYCTTRDGSTFVDCP

AT1G26820.1 ribonuclease 31.3e-1537.61Show/hide
Query:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR
        + D    W HEW+KHGTC E   LDQ  YFE  +      N    L N+GI P  + +Y + +I+N I+   G  P I CN D  +   QL++I  C   
Subjt:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR

Query:  DGSTFVDCP
          S F++CP
Subjt:  DGSTFVDCP

AT2G02990.1 ribonuclease 11.3e-1535.78Show/hide
Query:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR
        +G  +  W+HEW+KHGTC E  ++DQ  YF+ A+N     N    L  +GI P  +  Y+L+ I+++I+   G  P + CN D  +   QL+++  C  R
Subjt:  TGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTR

Query:  DGSTFVDCP
         GS  ++CP
Subjt:  DGSTFVDCP

AT2G39780.1 ribonuclease 22.8e-0729.79Show/hide
Query:  WKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTRD
        W HEW+KHGTC   +  D+  YF   +N     N  ++L  +G   +    Y L  I  AI+      P + C  D       + EI  C  +D
Subjt:  WKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEEILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTGCGAGTTGTGTTTCAATGGCAGCCAGCCACTTGCGGTGATGCGACCAAGCCTTATCCTTATTGCAATCAAGCTCCACAAAATAGATTCAGTATCCATGGG
ATGTGGCCTAGCCTATACAATGGTCAAACCCAATGTTCTGGTTAAGGTTCTAGAACCCAGACTGAGTGAAATGTGGGGAAACATTATCACAGGAGACAACCAATGGCTAT
GGAAACACGAATGGGATAAACATGGAACTTGCATAGAAGACATGTTATTAGATCAATCAGGATATTTTGAATATGCAATGAACACACTCTATTATTTCAATCCTGAGGAA
ATTCTAAAGAACAGTGGAATTTGGCCTACTCAAGAAGGATACTACACATTGGATGAAATTAAGAATGCAATCAGAGCAAAAACTGGAAAATTACCAGCCATTAGCTGCAA
TTACGATCATTGGACTTCATATGAACAATTGCATGAAATAAGCTACTGTACTACTCGGGATGGTTCAACTTTTGTGGATTGTCCCTCCAATGCCAACAAATGCAATGGTT
ATTCTGCCATGTGGTATCCCTCTCCCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTGCGAGTTGTGTTTCAATGGCAGCCAGCCACTTGCGGTGATGCGACCAAGCCTTATCCTTATTGCAATCAAGCTCCACAAAATAGATTCAGTATCCATGGG
ATGTGGCCTAGCCTATACAATGGTCAAACCCAATGTTCTGGTTAAGGTTCTAGAACCCAGACTGAGTGAAATGTGGGGAAACATTATCACAGGAGACAACCAATGGCTAT
GGAAACACGAATGGGATAAACATGGAACTTGCATAGAAGACATGTTATTAGATCAATCAGGATATTTTGAATATGCAATGAACACACTCTATTATTTCAATCCTGAGGAA
ATTCTAAAGAACAGTGGAATTTGGCCTACTCAAGAAGGATACTACACATTGGATGAAATTAAGAATGCAATCAGAGCAAAAACTGGAAAATTACCAGCCATTAGCTGCAA
TTACGATCATTGGACTTCATATGAACAATTGCATGAAATAAGCTACTGTACTACTCGGGATGGTTCAACTTTTGTGGATTGTCCCTCCAATGCCAACAAATGCAATGGTT
ATTCTGCCATGTGGTATCCCTCTCCCTACTAG
Protein sequenceShow/hide protein sequence
MTTCELCFNGSQPLAVMRPSLILIAIKLHKIDSVSMGCGLAYTMVKPNVLVKVLEPRLSEMWGNIITGDNQWLWKHEWDKHGTCIEDMLLDQSGYFEYAMNTLYYFNPEE
ILKNSGIWPTQEGYYTLDEIKNAIRAKTGKLPAISCNYDHWTSYEQLHEISYCTTRDGSTFVDCPSNANKCNGYSAMWYPSPY