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Lsi03G014930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G014930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease T(2)
Genome locationchr03:25956090..25956299
RNA-Seq ExpressionLsi03G014930
SyntenyLsi03G014930
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAA10891.1 ribonuclease (RNase LC1) [Luffa aegyptiaca]1.8e-1167.31Show/hide
Query:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKG
        MA  KREIV  VF LTI  P+VKSQTFD+FW+VQ WPPAVC+ Q G+C+G+G
Subjt:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKG

XP_004147499.1 ribonuclease MC [Cucumis sativus]4.0e-1469.64Show/hide
Query:  EIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG
        ++VFFVF LTI  PIVKSQTFD+FW VQQWPPAVCTLQSG+C+G+G  T  F + G
Subjt:  EIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG

XP_008443402.1 PREDICTED: ribonuclease MC-like [Cucumis melo]1.9e-1667.74Show/hide
Query:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG
        M + KR++VFFVF LTI  PIVKSQTFDNFW VQQWPPA+CTLQSG+C+G+G  T  F + G
Subjt:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG

XP_022155091.1 ribonuclease MC-like [Momordica charantia]2.6e-1367.86Show/hide
Query:  MARPKREIVF-FVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDT
        M   +REIVF FV A+TIF+PIVKSQTFD+FW VQQWPPAVC+ Q G+C+G+G  T
Subjt:  MARPKREIVF-FVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDT

XP_038905534.1 ribonuclease MC-like [Benincasa hispida]1.1e-1364.52Show/hide
Query:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG
        MA  KR IV  VF LTI  PIV+SQTFD+FW VQQWPPAVC LQSG+C+G+G  T  F + G
Subjt:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG

TrEMBL top hitse value%identityAlignment
A0A0A0LC37 Ribonuclease T(2)1.9e-1469.64Show/hide
Query:  EIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG
        ++VFFVF LTI  PIVKSQTFD+FW VQQWPPAVCTLQSG+C+G+G  T  F + G
Subjt:  EIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG

A0A1S3B8Q3 Ribonuclease T(2)9.2e-1767.74Show/hide
Query:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG
        M + KR++VFFVF LTI  PIVKSQTFDNFW VQQWPPA+CTLQSG+C+G+G  T  F + G
Subjt:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCG

A0A6J1CKH7 Ribonuclease T(2)1.2e-1160.71Show/hide
Query:  MARPKREIV-FFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDT
        M   KRE+V  F   +TIF P+VKSQ FDNFW VQQWPPAVC  Q G+C+G+G  T
Subjt:  MARPKREIV-FFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDT

A0A6J1DQN7 ribonuclease MC-like1.2e-1367.86Show/hide
Query:  MARPKREIVF-FVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDT
        M   +REIVF FV A+TIF+PIVKSQTFD+FW VQQWPPAVC+ Q G+C+G+G  T
Subjt:  MARPKREIVF-FVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDT

Q40115 Ribonuclease (RNase LC1)8.9e-1267.31Show/hide
Query:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKG
        MA  KREIV  VF LTI  P+VKSQTFD+FW+VQ WPPAVC+ Q G+C+G+G
Subjt:  MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKG

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC4.5e-0566.67Show/hide
Query:  FDNFWLVQQWPPAVCTLQ-SGQCIGKGYDT
        FD+FW VQQWPPAVC+ Q SG C G G  T
Subjt:  FDNFWLVQQWPPAVCTLQ-SGQCIGKGYDT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCCAAAGAGAGAAATTGTGTTCTTCGTGTTTGCCTTAACCATCTTCATTCCTATTGTGAAATCACAAACTTTTGATAATTTTTGGTTGGTTCAACAATGGCC
ACCAGCAGTTTGTACTTTACAGTCAGGACAATGTATAGGCAAGGGCTACGATACTTCACAATTCATGGTGTGTGGCTTCAAAAGGGAGGAGGCTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGCCAAAGAGAGAAATTGTGTTCTTCGTGTTTGCCTTAACCATCTTCATTCCTATTGTGAAATCACAAACTTTTGATAATTTTTGGTTGGTTCAACAATGGCC
ACCAGCAGTTTGTACTTTACAGTCAGGACAATGTATAGGCAAGGGCTACGATACTTCACAATTCATGGTGTGTGGCTTCAAAAGGGAGGAGGCTCTGTAA
Protein sequenceShow/hide protein sequence
MARPKREIVFFVFALTIFIPIVKSQTFDNFWLVQQWPPAVCTLQSGQCIGKGYDTSQFMVCGFKREEAL