CuGenDBv2

Gene ID	Lsi03G014940
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribonuclease T(2)
Genome location	chr03:25959044..25959310
RNA-Seq Expression	Lsi03G014940
Synteny	Lsi03G014940
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005576 - extracellular region (cellular component) GO:0003723 - RNA binding (molecular function) GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domains	IPR001568 - Ribonuclease T2-like IPR036430 - Ribonuclease T2-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053769.1 ribonuclease MC-like [Cucumis melo var. makuwa]

1.8e-27

72.41

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        AINMR++I+LLS +R GG+ PNG SKAKQRVE+AI + +   PILRCKTASNGQVLLTEIV CFDDDGVTL+NC +++SNCA SFIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

XP_008443402.1 PREDICTED: ribonuclease MC-like [Cucumis melo]

1.8e-27

72.41

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        AINMR++I+LLS +R GG+ PNG SKAKQRVE+AI + +   PILRCKTASNGQVLLTEIV CFDDDGVTL+NC +++SNCA SFIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

XP_022935695.1 ribonuclease MC-like [Cucurbita moschata]

1.8e-27

72.41

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        +IN+R+NINLLS +RV GV PNG SK+KQRVESAI + +K  P+LRCKTASNGQVLLTEIV C DDDGVTL+NC  +KSNCA +FIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

XP_023528964.1 ribonuclease MC-like [Cucurbita pepo subsp. pepo]

8.0e-28

73.56

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        +IN+R+NINLLS +RV GV PNG SK+KQRVESAI + +K  P+LRCKTASNGQVLLTEIV C DDDGVTL+NC  +KSNCA SFIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

XP_038905534.1 ribonuclease MC-like [Benincasa hispida]

2.1e-28

75.86

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        AINMR++I+LLS MR GGV PNG SKAKQRVES I + +   PILRCKTASNGQVLLTE+V CFDDDGVTLLNC +++SNCATSFIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC37 Ribonuclease T(2)

1.2e-26

72.41

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        AINMR+ I+LLS +R GGV PNG SKAKQRVE+AI + +   PILRCK ASNGQVLLTEIV CFDDDGVTL+NC +++SNCA SFIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

A0A1S3B8Q3 Ribonuclease T(2)

8.6e-28

72.41

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        AINMR++I+LLS +R GG+ PNG SKAKQRVE+AI + +   PILRCKTASNGQVLLTEIV CFDDDGVTL+NC +++SNCA SFIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

A0A5A7UJY4 Ribonuclease MC-like

8.6e-28

72.41

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        AINMR++I+LLS +R GG+ PNG SKAKQRVE+AI + +   PILRCKTASNGQVLLTEIV CFDDDGVTL+NC +++SNCA SFIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

A0A6J1FBD8 Ribonuclease T(2)

8.6e-28

72.41

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        +IN+R+NINLLS +RV GV PNG SK+KQRVESAI + +K  P+LRCKTASNGQVLLTEIV C DDDGVTL+NC  +KSNCA +FIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

A0A6J1J1Y7 Ribonuclease T(2)

7.3e-27

71.26

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Query:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        +IN+R+NI+LLS +RV GV PNG SK+KQRVE+AI   +K  P+LRCKTASNGQVLLTEIV C DDDGVTL+NC  +KSNCA SFIF
Subjt:  AINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

SwissProt top hits

e value

%identity

Alignment

P23540 Ribonuclease MC

5.4e-11

37.08

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Query:  MAINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQV-LLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF
        +A++MRNN +++  +R     PNG +K++Q ++  + A +  +P LRC+T    +V  L ++V CF  DG TL++CTR    C  +FIF
Subjt:  MAINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQV-LLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

Q01796 Ribonuclease S-2

8.4e-04

31.25

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Query:  MAINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKS
        +A+ ++   +LL+T+R  G+TP G     ++++ AI    +  P L+C     G + L EI  CF  +  +L  C +SKS
Subjt:  MAINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTATAAACATGAGGAACAATATCAACCTTCTTAGCACCATGAGAGTTGGTGGTGTAACACCAAATGGAGGCTCAAAGGCGAAACAAAGAGTAGAAAGTGCAATCTT
TGCTGGTTATAAGGCATATCCAATTCTTCGATGTAAAACAGCATCAAATGGCCAAGTCTTATTGACAGAGATTGTTACGTGCTTTGATGATGATGGTGTTACCCTTTTAA
ACTGCACTAGATCAAAATCCAATTGTGCTACTAGCTTTATCTTTTGA

mRNA sequence

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Protein sequence

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MAINMRNNINLLSTMRVGGVTPNGGSKAKQRVESAIFAGYKAYPILRCKTASNGQVLLTEIVTCFDDDGVTLLNCTRSKSNCATSFIF

Lsi03G014940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome