CuGenDBv2

Gene ID	Lsi03G015460
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH-ubiquinone oxidoreductase chain 2
Genome location	chr03:26441002..26442229
RNA-Seq Expression	Lsi03G015460
Synteny	Lsi03G015460
Gene Ontology terms	GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009507 - chloroplast (cellular component) GO:0009579 - thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7117288.1 hypothetical protein RHSIM_RhsimMtG0002900 [Rhododendron simsii]

9.6e-28

83.12

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTM
        +TSKKYDYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQLPNLMRHRVR AGN SMGGRL LL PQGWLI +V M
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTM

PKI40731.1 hypothetical protein CRG98_038869 [Punica granatum]

1.4e-26

86.11

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKKYDYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQLPNLMRHRVR AGN SMGGRL LL PQGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

PPE02776.1 hypothetical protein GOBAR_DD00191 [Gossypium barbadense]

3.1e-26

81.94

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKKYDYPPLV+N+GWLG LSVARLGGQ +LGC GAI AQ PNLMRHRV+ AGNCSMGGRL LL PQGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

RWR97880.1 NADH:ubiquinone/plastoquinone oxidoreductase [Cinnamomum micranthum f. kanehirae]

2.0e-25

84.72

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKK DYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQLPNLMRHRVR AGN SMGGRL LL PQGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

YP_004222261.1 hypothetical protein BevumaM_p022 [Beta vulgaris subsp. maritima]

1.2e-25

84.72

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKKYDYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQLPNLMRHRVR AGN SMGGRL LL  QGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

TrEMBL top hits

e value

%identity

Alignment

A0A2H5MUX0 Uncharacterized protein

2.8e-25

83.33

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKKYDYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQ PNLMRHRVR AGN SMG RL LL PQGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

A0A2I0I9S4 Uncharacterized protein

6.7e-27

86.11

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKKYDYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQLPNLMRHRVR AGN SMGGRL LL PQGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

A0A3S3PUE1 NADH:ubiquinone/plastoquinone oxidoreductase

9.6e-26

84.72

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKK DYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQLPNLMRHRVR AGN SMGGRL LL PQGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

E6ZDX1 Uncharacterized protein orf134c

5.7e-26

84.72

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKKYDYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQLPNLMRHRVR AGN SMGGRL LL  QGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

G2XLP0 Uncharacterized protein

5.7e-26

84.72

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI
        +TSKKYDYPPLV+N+GWLG LSVARLGGQ ALGC GAIIAQLPNLMRHRVR AGN SMGGRL LL  QGWLI
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLI

SwissProt top hits

e value

%identity

Alignment

O05000 NADH-ubiquinone oxidoreductase chain 2

3.4e-04

37.35

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTMLHLMCF
        +TSKKYDYPPL +N+GWLG LSV        L   GA +  + +L  + +    N +   ++FLLL     I        MCF
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTMLHLMCF

P26846 NADH-ubiquinone oxidoreductase chain 2

2.6e-04

82.61

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Query:  TTSKKYDYPPLVNNMGWLGSLSV
        +TSKKYDYPPLV N+GWLG LSV
Subjt:  TTSKKYDYPPLVNNMGWLGSLSV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00285.1 NADH dehydrogenase 2A

1.4e-05

37.65

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTMLHLMCFYS
        +TSKKYDYPPL +N+GWLG LSV        L   GA +  + +L  + +    N +   ++FLLL     I        MCF S
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTMLHLMCFYS

ATMG01320.1 NADH dehydrogenase 2B

1.4e-05

37.65

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Query:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTMLHLMCFYS
        +TSKKYDYPPL +N+GWLG LSV        L   GA +  + +L  + +    N +   ++FLLL     I        MCF S
Subjt:  TTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTMLHLMCFYS

Sequences

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CDS sequence

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CGATCCCTCCTAGCCGCCGTCGTCAGTGCAGCCTGCCTGTTGAAGACCGTAACTACCTCTAAGAAATATGATTATCCACCGTTAGTCAATAATATGGGTTGGCTTGGATC
ACTTAGTGTTGCGCGCCTAGGAGGGCAGCACGCTTTGGGATGCGAAGGAGCTATTATCGCCCAACTCCCTAACCTAATGCGGCACCGGGTTCGGGCCGCAGGGAACTGTA
GCATGGGGGGACGTCTATTCCTTTTGCTGCCGCAAGGCTGGCTAATCGACATTGTGACCATGCTACATCTTATGTGCTTCTACTCTTGTACCAAATGA

mRNA sequence

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Protein sequence

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RSLLAAVVSAACLLKTVTTSKKYDYPPLVNNMGWLGSLSVARLGGQHALGCEGAIIAQLPNLMRHRVRAAGNCSMGGRLFLLLPQGWLIDIVTMLHLMCFYSCTK

Lsi03G015460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome