CuGenDBv2

Gene ID	Lsi03G015830
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Polyglutamine tract-binding protein 1
Genome location	chr03:26858320..26865283
RNA-Seq Expression	Lsi03G015830
Synteny	Lsi03G015830
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0053859.1 WW domain-containing protein [Cucumis melo var. makuwa]

5.6e-87

87.43

Show/hide

Query:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR
        GVSTSSTNG WQDQSSEQNKCMGCGGWGLGL                  CQYLPT+NISNQQKTEN+KHS DPSIKKSATDRSKWKPP+GKGGKRESRKR
Subjt:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR

Query:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

TYK25544.1 uncharacterized protein E5676_scaffold352G006960 [Cucumis melo var. makuwa]

5.6e-87

87.43

Show/hide

Query:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR
        GVSTSSTNG WQDQSSEQNKCMGCGGWGLGL                  CQYLPT+NISNQQKTEN+KHS DPSIKKSATDRSKWKPP+GKGGKRESRKR
Subjt:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR

Query:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

XP_038906172.1 uncharacterized protein LOC120092051 isoform X1 [Benincasa hispida]

8.2e-86

86.91

Show/hide

Query:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR
        GVSTSSTNG+WQDQSSEQNKCMGC GWGLGL                  CQYLPTSNISNQQKTEN+KHS DPSIKKSATD SKWKPPIGKGGKRESRKR
Subjt:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR

Query:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        SYSEDDELDPMDPS+YSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

XP_038906174.1 uncharacterized protein LOC120092051 isoform X2 [Benincasa hispida]

8.2e-86

86.91

Show/hide

Query:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR
        GVSTSSTNG+WQDQSSEQNKCMGC GWGLGL                  CQYLPTSNISNQQKTEN+KHS DPSIKKSATD SKWKPPIGKGGKRESRKR
Subjt:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR

Query:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        SYSEDDELDPMDPS+YSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

XP_038906175.1 uncharacterized protein LOC120092051 isoform X3 [Benincasa hispida]

8.2e-86

86.91

Show/hide

Query:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR
        GVSTSSTNG+WQDQSSEQNKCMGC GWGLGL                  CQYLPTSNISNQQKTEN+KHS DPSIKKSATD SKWKPPIGKGGKRESRKR
Subjt:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR

Query:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        SYSEDDELDPMDPS+YSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFL2 Polyglutamine tract-binding protein 1

8.8e-86

86.91

Show/hide

Query:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR
        GVSTSSTNG WQDQ SEQNKCMGCGGWGLGL                  CQYLPT+NISNQQK ENVKHS DPSIKKS TDRSKWKPPIGKGGKRESRKR
Subjt:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR

Query:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

A0A5A7UK56 Polyglutamine tract-binding protein 1

2.7e-87

87.43

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Query:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR
        GVSTSSTNG WQDQSSEQNKCMGCGGWGLGL                  CQYLPT+NISNQQKTEN+KHS DPSIKKSATDRSKWKPP+GKGGKRESRKR
Subjt:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR

Query:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

A0A5D3DPP7 Polyglutamine tract-binding protein 1

2.7e-87

87.43

Show/hide

Query:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR
        GVSTSSTNG WQDQSSEQNKCMGCGGWGLGL                  CQYLPT+NISNQQKTEN+KHS DPSIKKSATDRSKWKPP+GKGGKRESRKR
Subjt:  GVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKR

Query:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  SYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

A0A6J1F9X9 Polyglutamine tract-binding protein 1

4.1e-83

83.94

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Query:  AIGVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESR
        A GVSTSSTNGKWQDQ S+Q+KCMGCGGWGLGL                  CQYLPTSNI NQQKTEN+K++ DPSIKKSA+DRSK KPPIGKGGKRESR
Subjt:  AIGVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESR

Query:  KRSYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        KRS+SEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  KRSYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

A0A6J1J063 Polyglutamine tract-binding protein 1

3.5e-82

82.9

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Query:  AIGVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESR
        A GVSTSSTNGKWQDQ S+ +KCMGCGGWGLGL                  CQYLPTSNI+NQ KTEN+K+++DPSIKKSA+DRSK KPPIGKGGKRESR
Subjt:  AIGVSTSSTNGKWQDQSSEQNKCMGCGGWGLGL------------------CQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESR

Query:  KRSYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD
        KRS+SEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSS YAPISKRGDGSDGLGDAD
Subjt:  KRSYSEDDELDPMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

SwissProt top hits

e value

%identity

Alignment

A1YFA7 Polyglutamine-binding protein 1

1.2e-18

67.11

Show/hide

Query:  ESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK
        +S+K    +D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS+TK+
Subjt:  ESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK

A2T806 Polyglutamine-binding protein 1

1.2e-18

67.11

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Query:  ESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK
        +S+K    +D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS+TK+
Subjt:  ESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK

O60828 Polyglutamine-binding protein 1

1.2e-18

67.11

Show/hide

Query:  ESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK
        +S+K    +D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS+TK+
Subjt:  ESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK

Q2HJC9 Polyglutamine-binding protein 1

5.2e-19

67.11

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Query:  ESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK
        +S+K +  +D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS+TK+
Subjt:  ESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK

Q91VJ5 Polyglutamine-binding protein 1

1.2e-18

65.48

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Query:  PIGKGGKRESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK
        P  K  K  SRK     D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS+TK+
Subjt:  PIGKGGKRESRKRSYSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKK

Arabidopsis top hits

e value

%identity

Alignment

AT2G41020.1 WW domain-containing protein

4.2e-48

58.47

Show/hide

Query:  VSTSSTNGKWQDQSSEQNKCMGCGGWGLGLCQ----YLPTSNISNQQKTE----NVKHSTD--PSIKKSATDRSKWKPPIGKGGKRESRKRSYSEDDELD
        V+ S+ NGK +   S+  +C GCGGWG+GL Q     +  + + N  + +    ++ H T+   S +K    RS  KPP+    K   +KR+++EDDELD
Subjt:  VSTSSTNGKWQDQSSEQNKCMGCGGWGLGLCQ----YLPTSNISNQQKTE----NVKHSTD--PSIKKSATDRSKWKPPIGKGGKRESRKRSYSEDDELD

Query:  PMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIA-SQTKKGSSQYAPISKRGDGSDGLGDAD
        PMDPSSYSDAPRGGWVVGLKGVQPRAADTTA+GPLFQQRPYPSPGAVLR+NAE+A SQ KK +SQ+  I+KRGDGSDGLGDAD
Subjt:  PMDPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIA-SQTKKGSSQYAPISKRGDGSDGLGDAD

Sequences

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CDS sequence

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ATGAAGAGAAAGCTTGCTTTCATGGCTGAGCTCGGGGCAGTGAGGGCCATTGGGGTTTCTACGAGTTCAACCAATGGGAAGTGGCAGGATCAATCGTCTGAGCAAAATAA
ATGCATGGGATGCGGTGGCTGGGGACTAGGCCTTTGTCAGTACTTGCCAACCAGCAATATTAGTAATCAGCAGAAGACAGAGAATGTCAAGCATAGCACTGATCCCTCCA
TTAAAAAATCTGCGACGGATAGGTCCAAATGGAAACCTCCAATTGGGAAAGGTGGAAAACGAGAAAGTAGGAAGCGTTCCTATAGTGAAGATGATGAATTGGATCCAATG
GATCCTAGCTCTTATTCAGATGCGCCTCGTGGTGGCTGGGTCGTGGGTCTAAAAGGTGTGCAACCTCGAGCAGCAGATACTACTGCTACAGGTCCTCTCTTTCAACAGCG
GCCATACCCATCACCTGGAGCTGTTCTAAGGAAGAATGCTGAAATTGCTTCACAGACCAAGAAGGGAAGCTCTCAGTATGCACCTATTTCCAAGAGAGGTGATGGAAGTG
ATGGCCTTGGTGACGCTGACTGA

mRNA sequence

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Protein sequence

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MKRKLAFMAELGAVRAIGVSTSSTNGKWQDQSSEQNKCMGCGGWGLGLCQYLPTSNISNQQKTENVKHSTDPSIKKSATDRSKWKPPIGKGGKRESRKRSYSEDDELDPM
DPSSYSDAPRGGWVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKGSSQYAPISKRGDGSDGLGDAD

Lsi03G015830 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome