CuGenDBv2

Gene ID	Lsi03G016060
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	chr03:27121384..27122601
RNA-Seq Expression	Lsi03G016060
Synteny	Lsi03G016060
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

6.6e-202

94.13

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSS+LLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
        TSQT SSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ DA
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----PDANP
        ENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP    PDANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----PDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
        L   AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        DEGSSEDDD
Subjt:  DEGSSEDDD

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

2.4e-204

94.62

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSS+LLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
        TSQT SSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+  A
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP
        ENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
        LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        DEGSSEDDD
Subjt:  DEGSSEDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

2.5e-201

92.44

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSS+LLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
         SQT SSPST LD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDD 
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP
        EN+S CS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEP    P DANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYT
        L+N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRP+ALPGLHKPPEPIQVR VQLDILDQDDDSSDYT
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYT

Query:  SDEGSSEDDD
        SDEGSSEDDD
Subjt:  SDEGSSEDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

2.3e-194

89.98

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSS+LLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
         SQT S+PST LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY++RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DD 
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP
        ENES CS +TTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VESTEKTIEPMIEP    P DANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
        L+ +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR +ALPGLH+P EPIQVRHVQLDILDQDDDSSDY S
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        +EGSSEDDD
Subjt:  DEGSSEDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

5.2e-207

94.87

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSS+LLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
        TSQT SSPST+LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVK KDDA
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP
        ENES CS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEP    P DANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
        LSNMA+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRP+A PGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        DEGSSEDDD
Subjt:  DEGSSEDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

3.2e-202

94.13

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSS+LLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
        TSQT SSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ DA
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----PDANP
        ENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP    PDANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----PDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
        L   AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        DEGSSEDDD
Subjt:  DEGSSEDDD

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

1.2e-204

94.62

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSS+LLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
        TSQT SSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+  A
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP
        ENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
        LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        DEGSSEDDD
Subjt:  DEGSSEDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

1.2e-204

94.62

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSS+LLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
        TSQT SSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+  A
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP
        ENES CS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPP----DANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
        LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRP+ALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        DEGSSEDDD
Subjt:  DEGSSEDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

1.2e-201

92.44

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSS+LLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
         SQT SSPST LD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY+IRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDD 
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP
        EN+S CS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEP    P DANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYT
        L+N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRP+ALPGLHKPPEPIQVR VQLDILDQDDDSSDYT
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYT

Query:  SDEGSSEDDD
        SDEGSSEDDD
Subjt:  SDEGSSEDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

1.6e-193

89.73

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSS+LLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA
         SQT S+PST LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAY++RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DD 
Subjt:  TSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDA

Query:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP
        ENES CS TTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE     P DANP
Subjt:  ENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PPDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS
        L+ +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR +ALPGLH+P EPIQVRHVQLDILDQDDDSSDY S
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS

Query:  DEGSSEDDD
        +EGSSEDDD
Subjt:  DEGSSEDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

3.5e-04

30.69

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Query:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLD-VLFDDYADYQRPRR-----------VKTKD
        S  +T   +L L N L    ++++  + +L++   +Q    +I  +I  KD  +   A  LKD E  L+  L  D  +                 +K  D
Subjt:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLD-VLFDDYADYQRPRR-----------VKTKD

Query:  DAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP
        DA      S    V  ++   D++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A +DV  P
Subjt:  DAENESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

7.5e-140

65.89

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSSLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS+LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSSLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A +I++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDAE---NESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK
        D+L DDY+DY++P+R K ++D E   NES  S++TTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK
Subjt:  DVLFDDYADYQRPRRVKTKDDAE---NESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK

Query:  AVESTEKTIEPMIEPPPDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPSALPGLHKPPEP
         VE+ EK +E +IEPPP    + +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPP++S+   R ++ Q +RPS   GLH+PP+ 
Subjt:  AVESTEKTIEPMIEPPPDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPSALPGLHKPPEP

Query:  IQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
        IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  IQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

5.3e-141

65.89

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSSLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS+LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSSLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A +I++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPSTALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDAE---NESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK
        D+L DDY+DY++P+R K ++D E   NES  S++TTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK
Subjt:  DVLFDDYADYQRPRRVKTKDDAE---NESFCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK

Query:  AVESTEKTIEPMIEPPPDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPSALPGLHKPPEP
         VE+ EK +E +IEPPP    + +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPP++S+   R ++ Q +RPS   GLH+PP+ 
Subjt:  AVESTEKTIEPMIEPPPDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPSALPGLHKPPEP

Query:  IQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
        IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  IQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCCCAACAGTC
CCACCACCAAAATCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCAGCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCAT
TAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCGCCCTCTACT
GCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCATTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCA
AGACTCTAAGCAGAAGATTGCTTATGACATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCCAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTCGATG
ATTATGCGGATTATCAGCGTCCTCGACGGGTTAAAACAAAGGATGATGCTGAAAATGAGTCATTCTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGAT
ATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAGGACGAGCA
AATGCGTGCGTCGCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCACCAGATG
CTAATCCTCTTTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGATTTACCA
ATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAGTGCTCTTCCAGG
ATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGACGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATG
ATGATTGA

mRNA sequence

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Protein sequence

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MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSSLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPST
ALDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYDIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDAENESFCSTTTTVASQLRLSD
ILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPPDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLP
MPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPSALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Lsi03G016060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome