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Lsi03G016710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G016710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionribosome production factor 1-like
Genome locationchr03:27908453..27910897
RNA-Seq ExpressionLsi03G016710
SyntenyLsi03G016710
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027746.1 Ribosome production factor 1 [Cucurbita argyrosperma subsp. argyrosperma]1.9e-1456.7Show/hide
Query:  RTIENASEVDETVCKPDDEE--------------------------------IGPAPISELLSVIPNALYYKRGTIDLKKVILIFLFSNELTEQKGK
        RTIEN  EVDETVCKPDDEE                                IGP  ISELLSVIPNA YYKRGT DLKKV LIF+FSNE TE KGK
Subjt:  RTIENASEVDETVCKPDDEE--------------------------------IGPAPISELLSVIPNALYYKRGTIDLKKVILIFLFSNELTEQKGK
XP_007135345.1 hypothetical protein PHAVU_010G1213000g, partial [Phaseolus vulgaris]5.1e-1276Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        RTIEN  E+DETVCKPDDEE GPA ISELLS+IPNA Y+ RGT DLKK++
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
XP_008443158.1 PREDICTED: ribosome production factor 1 isoform X2 [Cucumis melo]3.2e-1488Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        RTIEN  EVDETVCKPDDEEIGPA ISELLSVIPNA YYKRGT DLKK+I
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
XP_035539518.1 ribosome production factor 1 isoform X2 [Juglans regia]6.0e-1382Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        RTIEN  E DETVCKPDDEE GPA ISELLSVIPNA YYKRGT DLKK++
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
XP_041000718.1 ribosome production factor 1 isoform X2 [Juglans microcarpa x Juglans regia]6.0e-1382Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        RTIEN  E DETVCKPDDEE GPA ISELLSVIPNA YYKRGT DLKK++
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
TrEMBL top hitse value%identityAlignment
A0A1S3B7C9 ribosome production factor 1 isoform X21.5e-1488Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        RTIEN  EVDETVCKPDDEEIGPA ISELLSVIPNA YYKRGT DLKK+I
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
A0A4Y1R0Y6 Ribosomal RNA processing Brix domain protein7.2e-1276Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        +TIEN  E DETVCKPDDEE GP  I ELLSVIPNA YYKRGT DLKK++
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
A0A6A5M4S9 Uncharacterized protein9.4e-1276Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        RTIEN  EVDET+CKPDDEE GP  IS+LLSVI NA YYKRGT DLKK++
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
A0A6P9E5J3 ribosome production factor 1 isoform X22.9e-1382Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        RTIEN  E DETVCKPDDEE GPA ISELLSVIPNA YYKRGT DLKK++
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
V7AP37 Brix domain-containing protein (Fragment)2.5e-1276Show/hide
Query:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
        RTIEN  E+DETVCKPDDEE GPA ISELLS+IPNA Y+ RGT DLKK++
Subjt:  RTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G01560.1 Ribosomal RNA processing Brix domain protein1.3e-1045.12Show/hide
Query:  RTIENASEVDETVCKPDDEEI--------------------------------GPAPISELLSVIPNALYYKRGTIDLKKVI
        +TIEN  E DETVC+PDDEE+                                GPA ISELLSVIPN+ Y KRGT DLKK++
Subjt:  RTIENASEVDETVCKPDDEEI--------------------------------GPAPISELLSVIPNALYYKRGTIDLKKVI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATGCAAAAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACATGGAGAAAAACCTCCTCCTAGGAAGGCGGACCATTGAGAATGCCAGTGAGGT
TGATGAAACTGTTTGCAAACCTGATGATGAAGAGATTGGACCTGCCCCTATTTCAGAGTTGCTTTCAGTGATACCAAATGCACTTTACTACAAAAGAGGAACTATCGATT
TGAAGAAGGTTATACTCATATTTCTGTTTTCGAATGAACTCACAGAACAGAAGGGAAAGAAAAATTAG
mRNA sequenceShow/hide mRNA sequence
CTTAACTTCAACCAACTATTCGGTCTGCTCCTTCGCCGGTCGCCACCGCCGGCTTCTTCTTCTTCTTCCCAAATCGACATTTCAGAAACAATTTCATTGATGAATGAAAT
ATCTAAGAGGTACAAAAGGCCCATAAAAGGATTACAAAAGTTTTCTCCAATTCGGAACGAGGATATTTAAGCTGTGACCTGAGATATAAATGAAAAAATTGGACTTTGTC
CACTTTTTGCTGCAATTGAGATTTGACATGGGTCGAGAAAAATAGGTTGGCAAGGAGTATAGATGGGAGAGGAGGAGGAGAGCAGGGATGCAATCCCATCATTGAAGAAC
AAGGAAAAGAGAGCAGAAGTGCACACCGAACCTCAAAAACCAAAAGAAGCATGAGAAATGCAAAAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACATG
GAGAAAAACCTCCTCCTAGGAAGGCGGACCATTGAGAATGCCAGTGAGGTTGATGAAACTGTTTGCAAACCTGATGATGAAGAGATTGGACCTGCCCCTATTTCAGAGTT
GCTTTCAGTGATACCAAATGCACTTTACTACAAAAGAGGAACTATCGATTTGAAGAAGGTTATACTCATATTTCTGTTTTCGAATGAACTCACAGAACAGAAGGGAAAGA
AAAATTAG
Protein sequenceShow/hide protein sequence
MRNAKGPRLVMLLRSKLLNMEKNLLLGRRTIENASEVDETVCKPDDEEIGPAPISELLSVIPNALYYKRGTIDLKKVILIFLFSNELTEQKGKKN