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Lsi03G016760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G016760
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionribosome production factor 1-like
Genome locationchr03:27952584..27957975
RNA-Seq ExpressionLsi03G016760
SyntenyLsi03G016760
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domainsIPR007109 - Brix domain
IPR044281 - U3 snoRNP protein/Ribosome production factor 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443155.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo]1.7e-5159.81Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYH
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                             +      ++
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYH

Query:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT
         +IGPAFISELLSVIPNAH+YKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPT HQPELVLTNFTT
Subjt:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT

Query:  GLGLGVGSLQRETF
         LGL VG L +  F
Subjt:  GLGLGVGSLQRETF

XP_008443158.1 PREDICTED: ribosome production factor 1 isoform X2 [Cucumis melo]2.8e-5470.88Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPASPIFCLYVTYHL----------SIGPAFISELLSVIPNAHHYKRGTNDLKKIL
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P      +  T  +           IGPAFISELLSVIPNAH+YKRGTNDLKKI+
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPASPIFCLYVTYHL----------SIGPAFISELLSVIPNAHHYKRGTNDLKKIL

Query:  EYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTTGLGLGVGSLQRETF
        EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPT HQPELVLTNFTT LGL VG L +  F
Subjt:  EYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTTGLGLGVGSLQRETF

XP_022155906.1 ribosome production factor 1-like [Momordica charantia]4.2e-5058.88Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------ASPIFCLYVTYH
        MIKNKEKR EVHANLK QKKLEKRK+AKARDA+EKQALE GEE  P                                             +      ++
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------ASPIFCLYVTYH

Query:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT
         SIGP+FISELLSVIPNAH+YKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPTSH+PELVLTNFTT
Subjt:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT

Query:  GLGLGVGSLQRETF
         LGL VG L +  F
Subjt:  GLGLGVGSLQRETF

XP_031737500.1 ribosome production factor 1 [Cucumis sativus]6.5e-5160.09Show/hide
Query:  IKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYHL
        IKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                             I      ++ 
Subjt:  IKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYHL

Query:  SIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTTG
        +IGPAFISELLSVIPNAH+YKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPT HQPELVLTNFTT 
Subjt:  SIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTTG

Query:  LGLGVGSLQRETF
        LGL VG L +  F
Subjt:  LGLGVGSLQRETF

XP_038906205.1 ribosome production factor 1 [Benincasa hispida]7.7e-5259.81Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYH
        MIKNKEKRAEVHANLKNQKKLEKRK+AKARDAAEKQALE GEE+ P                                             +      ++
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYH

Query:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT
         +IGP FISELLSVIPNAH+YKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPTSHQPELVLTNFTT
Subjt:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT

Query:  GLGLGVGSLQRETF
         LGL +G L +  F
Subjt:  GLGLGVGSLQRETF

TrEMBL top hitse value%identityAlignment
A0A0A0LH42 Brix domain-containing protein3.2e-5160.09Show/hide
Query:  IKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYHL
        IKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                             I      ++ 
Subjt:  IKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYHL

Query:  SIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTTG
        +IGPAFISELLSVIPNAH+YKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPT HQPELVLTNFTT 
Subjt:  SIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTTG

Query:  LGLGVGSLQRETF
        LGL VG L +  F
Subjt:  LGLGVGSLQRETF

A0A1S3B7C9 ribosome production factor 1 isoform X21.4e-5470.88Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPASPIFCLYVTYHL----------SIGPAFISELLSVIPNAHHYKRGTNDLKKIL
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P      +  T  +           IGPAFISELLSVIPNAH+YKRGTNDLKKI+
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPASPIFCLYVTYHL----------SIGPAFISELLSVIPNAHHYKRGTNDLKKIL

Query:  EYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTTGLGLGVGSLQRETF
        EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPT HQPELVLTNFTT LGL VG L +  F
Subjt:  EYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTTGLGLGVGSLQRETF

A0A1S3B854 ribosome production factor 1 isoform X18.3e-5259.81Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYH
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                             +      ++
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYH

Query:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT
         +IGPAFISELLSVIPNAH+YKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPT HQPELVLTNFTT
Subjt:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT

Query:  GLGLGVGSLQRETF
         LGL VG L +  F
Subjt:  GLGLGVGSLQRETF

A0A5A7UHC7 Ribosome production factor 1 isoform X18.3e-5259.81Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYH
        MIKNKEKRAEVHANLK+QKKLEKRK+AKARDAAEKQALE GEE+ P                                             +      ++
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPAS------------------------------------------PIFCLYVTYH

Query:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT
         +IGPAFISELLSVIPNAH+YKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPT HQPELVLTNFTT
Subjt:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT

Query:  GLGLGVGSLQRETF
         LGL VG L +  F
Subjt:  GLGLGVGSLQRETF

A0A6J1DT48 ribosome production factor 1-like2.0e-5058.88Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------ASPIFCLYVTYH
        MIKNKEKR EVHANLK QKKLEKRK+AKARDA+EKQALE GEE  P                                             +      ++
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSP------------------------------------------ASPIFCLYVTYH

Query:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT
         SIGP+FISELLSVIPNAH+YKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGL EG TA   +S         NHGNPTSH+PELVLTNFTT
Subjt:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT

Query:  GLGLGVGSLQRETF
         LGL VG L +  F
Subjt:  GLGLGVGSLQRETF

SwissProt top hitse value%identityAlignment
Q5R631 Ribosome production factor 11.1e-1330.86Show/hide
Query:  ELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAIL---------DVSYNHGNPTSHQPELVLTNFTTGLGLGVG-
        +L +VIPN+H Y R    LKKI+    A+DFT L+V++  R+  +GL++  L  G TA           ++     +PT H PE++L NFTT LG  +G 
Subjt:  ELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAIL---------DVSYNHGNPTSHQPELVLTNFTTGLGLGVG-

Query:  --------------------------------------------------------SLQRETFDSKAGEYEWVHK
                                                                SLQ+ TFDSK GEYEWVHK
Subjt:  --------------------------------------------------------SLQRETFDSKAGEYEWVHK

Q6IQU6 Ribosome production factor 12.5e-1330.34Show/hide
Query:  FISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS---------YNHGNPTSHQPELVLTNFTTGLGLG
        F  +L +VIP+A+ Y R    LKK++    ++ FT LMV++  R+  +G+++  L +G TA   VS             NPT H PE++L NFTT LG  
Subjt:  FISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS---------YNHGNPTSHQPELVLTNFTTGLGLG

Query:  VG---------------------------------------------------------SLQRETFDSKAGEYEWVHK
        +G                                                         SLQ+ TFDSK GEYEWVHK
Subjt:  VG---------------------------------------------------------SLQRETFDSKAGEYEWVHK

Q7TND5 Ribosome production factor 13.3e-1330.29Show/hide
Query:  ELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAIL---------DVSYNHGNPTSHQPELVLTNFTTGLGLGVG-
        +L +VIP++H Y R    LKKI+    A+DFT L+V++  R+  +GL++  L  G TA           ++     +PT H PE++L NFTT LG  +G 
Subjt:  ELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAIL---------DVSYNHGNPTSHQPELVLTNFTTGLGLGVG-

Query:  --------------------------------------------------------SLQRETFDSKAGEYEWVHK
                                                                SLQ+ TFDSK GEYEWVHK
Subjt:  --------------------------------------------------------SLQRETFDSKAGEYEWVHK

Q8AVP1 Ribosome production factor 12.5e-1329.78Show/hide
Query:  FISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS---------YNHGNPTSHQPELVLTNFTTGLGLG
        F  +L S+IPN+  Y R    LKKI+    ++D+T L+V++  R+  +GL++  L +G TA   +S              PT H+PE++L NFTT LG  
Subjt:  FISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS---------YNHGNPTSHQPELVLTNFTTGLGLG

Query:  VG---------------------------------------------------------SLQRETFDSKAGEYEWVHK
        +G                                                         SLQ+ TFDSK GEYEWVHK
Subjt:  VG---------------------------------------------------------SLQRETFDSKAGEYEWVHK

Q9H9Y2 Ribosome production factor 11.1e-1330.86Show/hide
Query:  ELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAIL---------DVSYNHGNPTSHQPELVLTNFTTGLGLGVG-
        +L +VIPN+H Y R    LKKI+    A+DFT L+V++  R+  +GL++  L  G TA           ++     +PT H PE++L NFTT LG  +G 
Subjt:  ELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAIL---------DVSYNHGNPTSHQPELVLTNFTTGLGLGVG-

Query:  --------------------------------------------------------SLQRETFDSKAGEYEWVHK
                                                                SLQ+ TFDSK GEYEWVHK
Subjt:  --------------------------------------------------------SLQRETFDSKAGEYEWVHK

Arabidopsis top hitse value%identityAlignment
AT1G63780.1 Ribosomal RNA processing Brix domain protein9.2e-1135.14Show/hide
Query:  FISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTA---ILDVSYNH--------GNPTSHQPELVLTNFTTGLG
        F  EL  V PN+    RG+  + +I+E A + DFT +++VH  R   DGL+I  L  G TA   +L+V   H        G      P L+  NFTT +G
Subjt:  FISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTA---ILDVSYNH--------GNPTSHQPELVLTNFTTGLG

Query:  LGVGSLQRETF
          VG++ +  F
Subjt:  LGVGSLQRETF

AT4G01560.1 Ribosomal RNA processing Brix domain protein1.6e-3948.6Show/hide
Query:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGE------------------------------------EVSP------ASPIFCLYVTYH
        MIKNK+KR++V+A  K++KKLEK+KK +ARDAAEK+ALE GE                                    E +P      A  +      ++
Subjt:  MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGE------------------------------------EVSP------ASPIFCLYVTYH

Query:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT
         + GPA ISELLSVIPN+H+ KRGT DLKKI+EYA  KDFTSL+VVHT+RR+ D LLIIGL  G TA   +S         NHGNPTSHQPELVL NFTT
Subjt:  LSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRKLDGLLIIGLSEGSTAILDVS--------YNHGNPTSHQPELVLTNFTT

Query:  GLGLGVGSLQRETF
         LG  VG   +  F
Subjt:  GLGLGVGSLQRETF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAAGAATAAAGAAAAGAGGGCAGAAGTGCATGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACGAAAGAAGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGC
TCTTGAACATGGAGAAGAAGTATCTCCAGCATCTCCGATCTTCTGCTTGTATGTGACTTACCATTTGTCGATTGGACCTGCTTTTATATCAGAGTTGCTTTCGGTGATAC
CAAATGCACATCACTACAAGAGAGGAACTAACGATTTGAAGAAGATTTTAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAA
TTGGATGGCCTTTTAATTATTGGCTTATCTGAGGGGTCTACTGCCATATTGGATGTGTCTTACAATCATGGAAATCCAACCAGTCATCAGCCAGAGCTTGTATTGACCAA
CTTCACAACAGGCCTTGGTCTTGGTGTTGGAAGTTTGCAGCGCGAAACCTTCGATTCAAAAGCTGGGGAATATGAATGGGTTCATAAGGGTGGACTGCTTATCAAATTCG
AATTTCCATTTCGGCCTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATTGCTTTCCTTGTGTGTTCCTTCTGCAATTATAAAATCAACTAATTTGAATACTACAATGAGGTTGATCAAGGAGTATAGGTGGGGAGGGAGAAGAAGAATAAGGGTAT
AATCCCATCAATGATAAAGAATAAAGAAAAGAGGGCAGAAGTGCATGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACGAAAGAAGGCCAAGGCTCGTGATGCTGCTG
AGAAGCAAGCTCTTGAACATGGAGAAGAAGTATCTCCAGCATCTCCGATCTTCTGCTTGTATGTGACTTACCATTTGTCGATTGGACCTGCTTTTATATCAGAGTTGCTT
TCGGTGATACCAAATGCACATCACTACAAGAGAGGAACTAACGATTTGAAGAAGATTTTAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTCCATACGAG
TAGGAGAAAATTGGATGGCCTTTTAATTATTGGCTTATCTGAGGGGTCTACTGCCATATTGGATGTGTCTTACAATCATGGAAATCCAACCAGTCATCAGCCAGAGCTTG
TATTGACCAACTTCACAACAGGCCTTGGTCTTGGTGTTGGAAGTTTGCAGCGCGAAACCTTCGATTCAAAAGCTGGGGAATATGAATGGGTTCATAAGGGTGGACTGCTT
ATCAAATTCGAATTTCCATTTCGGCCTGCATGA
Protein sequenceShow/hide protein sequence
MIKNKEKRAEVHANLKNQKKLEKRKKAKARDAAEKQALEHGEEVSPASPIFCLYVTYHLSIGPAFISELLSVIPNAHHYKRGTNDLKKILEYANAKDFTSLMVVHTSRRK
LDGLLIIGLSEGSTAILDVSYNHGNPTSHQPELVLTNFTTGLGLGVGSLQRETFDSKAGEYEWVHKGGLLIKFEFPFRPA