CuGenDBv2

Gene ID	Lsi03G017670
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	splicing factor 3B subunit 3
Genome location	chr03:29070381..29071145
RNA-Seq Expression	Lsi03G017670
Synteny	Lsi03G017670
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005686 - U2 snRNP (cellular component) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8645775.1 hypothetical protein Csa_017057 [Cucumis sativus]

1.2e-11

95.56

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQE VLSS VGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

XP_031738107.1 splicing factor 3B subunit 3-like isoform X1 [Cucumis sativus]

1.2e-11

95.56

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQE VLSS VGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

XP_031738108.1 splicing factor 3B subunit 3-like isoform X2 [Cucumis sativus]

1.2e-11

95.56

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQE VLSS VGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

XP_031744689.1 LOW QUALITY PROTEIN: splicing factor 3B subunit 3 [Cucumis sativus]

1.2e-11

95.56

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQE VLSS VGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

XP_038904803.1 splicing factor 3B subunit 3 isoform X1 [Benincasa hispida]

2.0e-11

93.33

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQESVLSS VGS S+VKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LEB2 Uncharacterized protein

5.8e-12

95.56

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQE VLSS VGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

A0A1S3B741 pre-mRNA-splicing factor RSE1

2.2e-11

93.33

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQE VLSS VG LSAVKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

A0A5A7TJX6 Pre-mRNA-splicing factor RSE1

2.2e-11

93.33

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQE VLSS VG LSAVKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

A0A5D3DQ36 Pre-mRNA-splicing factor RSE1

2.2e-11

93.33

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQE VLSS VG LSAVKPSSKSMPASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

A0A6J1DB60 pre-mRNA-splicing factor RSE1 isoform X1

2.4e-10

86.67

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Query:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
        MQQESVLSSPVGS +A K S KS+PASIPINQVVQLLERIHYALN
Subjt:  MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G11960.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

2.0e-04

57.78

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Query:  QQESVLSSPVGSLSAVKPSSKSMP-ASIPINQVVQLLERIHYALN
        QQESVLS+P  S S  K SSK      + ++QVVQLLER+HYAL+
Subjt:  QQESVLSSPVGSLSAVKPSSKSMP-ASIPINQVVQLLERIHYALN

AT3G11960.2 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

2.0e-04

57.78

Show/hide

Query:  QQESVLSSPVGSLSAVKPSSKSMP-ASIPINQVVQLLERIHYALN
        QQESVLS+P  S S  K SSK      + ++QVVQLLER+HYAL+
Subjt:  QQESVLSSPVGSLSAVKPSSKSMP-ASIPINQVVQLLERIHYALN

Sequences

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CDS sequence

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ATGCAACAAGAGTCGGTATTATCGTCACCTGTTGGCTCACTAAGTGCAGTAAAACCGAGCTCAAAGTCAATGCCGGCGTCCATTCCCATCAATCAGGTTGTGCAGCTTCT
TGAAAGAATTCATTATGCACTCAATTAG

mRNA sequence

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ATGCAACAAGAGTCGGTATTATCGTCACCTGTTGGCTCACTAAGTGCAGTAAAACCGAGCTCAAAGTCAATGCCGGCGTCCATTCCCATCAATCAGGTTGTGCAGCTTCT
TGAAAGAATTCATTATGCACTCAATTAGTTATAATTCATTAACTTTTCGTGCGACTAAGCTTTGGAATTGGAATACCCGAACACGAAAAGCTTATATGGGTCAATACCTT
CGGTGCCTTCCCATACATACTGTACTATACTAACTATTGCGGGGGCGGCGACACATACAGCTGCGATGTTATTTTTCAGATTGGCCTGTGTAACTGTTGACACTTAAAAC
GCTGGCAACTCCTCGAAGTTGCATCTCTCTATAAAGAGCAGAGCGATACCTGTACAGGTGAATAAATGTGTTTTTACCAATTGAAGCTGCCTAACATTTTTTTTTCTCTG
TAATATATATAAATATATAATTTTATCAACTGAATGTGGAGATAAATAGAGAGAAAAGGGTGGCTAGTAAAGCAAAATCTCTGTACATTAGCTAAGCGATCGGCTACTTT
AGTTGCCTTTTTATTGTTATCTGTATTTATGTGTTGATTCAGGGTTTTGATAGACATTTTTCTTTGTACCTGCATTGGATAATAGTACCATTTTGGGGGATTTGTGGTTC
CTTAATAACTTATGCTCTAATGTGTACGATTATATGCATAGCTCCAGTATTTCTTTTGGATGGCAAATATTATTTTCTTGAGTATGCAGGACATTTGATGTGCTT

Protein sequence

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MQQESVLSSPVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN

Lsi03G017670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome