; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G017840 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G017840
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein At5g49610-like
Genome locationchr03:29261447..29261907
RNA-Seq ExpressionLsi03G017840
SyntenyLsi03G017840
Gene Ontology termsNA
InterPro domainsIPR013187 - F-box associated domain, type 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043777.1 F-box protein [Cucumis melo var. makuwa]1.5e-2048.76Show/hide
Query:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN
        ++T IF FDFY+ETWSKI +P+TI+N+ ++   +++F++W  +LVEYEGK     G+V          ELWVMEN   K++W KK+D  GSMP T YG +
Subjt:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN

Query:  ILMTWLY--NNNVMFSSIEMG
        I M WL+  ++NVMFS+IE G
Subjt:  ILMTWLY--NNNVMFSSIEMG

TYK25356.1 F-box protein [Cucumis melo var. makuwa]3.0e-2149.59Show/hide
Query:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN
        ++T IF FDFY+ETWSKI +P+TI+N+ ++   +++F++W  +LVEYEGK     G+V          ELWVMEN   K++W KK+D  GSMP T YG +
Subjt:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN

Query:  ILMTWLY--NNNVMFSSIEMG
        I M WL+  ++NVMFS+IEMG
Subjt:  ILMTWLY--NNNVMFSSIEMG

XP_004136723.1 F-box protein At5g49610 [Cucumis sativus]1.2e-1745.31Show/hide
Query:  TFIFTFDFYTETWSKITIPDTIINEYEDIRKN----NNFKKWRTKLVEYEGK----KVGNNGIVLWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGL
        T IF FDFY++TWSKI +P+TI+N+  + R N    N+ ++WRT+LVEYEGK    +  +       L ELWVM    HK+ W KK++F   MP TLYG 
Subjt:  TFIFTFDFYTETWSKITIPDTIINEYEDIRKN----NNFKKWRTKLVEYEGK----KVGNNGIVLWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGL

Query:  NILMTWL--YNNNVMFSSIEMGSVIART
        +IL+TWL  Y + V FS+   G    +T
Subjt:  NILMTWL--YNNNVMFSSIEMGSVIART

XP_008443600.1 PREDICTED: F-box protein At5g49610-like [Cucumis melo]1.5e-2048.76Show/hide
Query:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN
        ++T IF FDFY+ETWSKI +P+TI+N+ ++   +++F++W  +LVEYEGK     G+V          ELWVMEN   K++W KK+D  GSMP T YG +
Subjt:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN

Query:  ILMTWLY--NNNVMFSSIEMG
        I M WL+  ++NVMFS+IE G
Subjt:  ILMTWLY--NNNVMFSSIEMG

XP_022983376.1 F-box protein At5g49610-like [Cucurbita maxima]1.3e-1342.15Show/hide
Query:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIV------LWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGL
        +E  I  FDF +ETWS I  P+ I  E E   +   FK W TKLVEY+GK     G++           ELWVME+ Y +R+WTKK +F+ S PM +YG 
Subjt:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIV------LWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGL

Query:  NILMTWLYNNNVMFSSIEMGS
        + LM    N  V F ++E G+
Subjt:  NILMTWLYNNNVMFSSIEMGS

TrEMBL top hitse value%identityAlignment
A0A0A0LBP1 FBA_3 domain-containing protein5.7e-1845.31Show/hide
Query:  TFIFTFDFYTETWSKITIPDTIINEYEDIRKN----NNFKKWRTKLVEYEGK----KVGNNGIVLWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGL
        T IF FDFY++TWSKI +P+TI+N+  + R N    N+ ++WRT+LVEYEGK    +  +       L ELWVM    HK+ W KK++F   MP TLYG 
Subjt:  TFIFTFDFYTETWSKITIPDTIINEYEDIRKN----NNFKKWRTKLVEYEGK----KVGNNGIVLWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGL

Query:  NILMTWL--YNNNVMFSSIEMGSVIART
        +IL+TWL  Y + V FS+   G    +T
Subjt:  NILMTWL--YNNNVMFSSIEMGSVIART

A0A1S3B7Y4 F-box protein At5g49610-like7.2e-2148.76Show/hide
Query:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN
        ++T IF FDFY+ETWSKI +P+TI+N+ ++   +++F++W  +LVEYEGK     G+V          ELWVMEN   K++W KK+D  GSMP T YG +
Subjt:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN

Query:  ILMTWLY--NNNVMFSSIEMG
        I M WL+  ++NVMFS+IE G
Subjt:  ILMTWLY--NNNVMFSSIEMG

A0A5A7TPP2 F-box protein7.2e-2148.76Show/hide
Query:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN
        ++T IF FDFY+ETWSKI +P+TI+N+ ++   +++F++W  +LVEYEGK     G+V          ELWVMEN   K++W KK+D  GSMP T YG +
Subjt:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN

Query:  ILMTWLY--NNNVMFSSIEMG
        I M WL+  ++NVMFS+IE G
Subjt:  ILMTWLY--NNNVMFSSIEMG

A0A5D3DNY0 F-box protein1.5e-2149.59Show/hide
Query:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN
        ++T IF FDFY+ETWSKI +P+TI+N+ ++   +++F++W  +LVEYEGK     G+V          ELWVMEN   K++W KK+D  GSMP T YG +
Subjt:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVL-----WTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLN

Query:  ILMTWLY--NNNVMFSSIEMG
        I M WL+  ++NVMFS+IEMG
Subjt:  ILMTWLY--NNNVMFSSIEMG

A0A6J1J214 F-box protein At5g49610-like6.5e-1442.15Show/hide
Query:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIV------LWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGL
        +E  I  FDF +ETWS I  P+ I  E E   +   FK W TKLVEY+GK     G++           ELWVME+ Y +R+WTKK +F+ S PM +YG 
Subjt:  NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIV------LWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGL

Query:  NILMTWLYNNNVMFSSIEMGS
        + LM    N  V F ++E G+
Subjt:  NILMTWLYNNNVMFSSIEMGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGAGACTTTCATATTCACTTTTGATTTCTACACCGAGACTTGGTCTAAAATTACAATACCGGATACTATAATTAATGAGTATGAGGATATAAGAAAAAATAATAATTT
TAAAAAATGGCGTACTAAGCTTGTGGAGTATGAAGGAAAGAAAGTTGGGAATAATGGGATAGTTTTATGGACCTTGATAGAGCTATGGGTGATGGAAAATTCTTACCACA
AAAGAATTTGGACCAAAAAAATTGATTTTGTAGGGTCTATGCCTATGACTCTTTATGGATTGAATATTTTGATGACGTGGTTATATAATAATAATGTGATGTTCTCTAGT
ATAGAGATGGGGAGTGTAATTGCAAGAACTTGGAACATAGTCATTATAGTGTGCCGACGATGGTGTTTCCATTCGGTCGGATTT
mRNA sequenceShow/hide mRNA sequence
AATGAGACTTTCATATTCACTTTTGATTTCTACACCGAGACTTGGTCTAAAATTACAATACCGGATACTATAATTAATGAGTATGAGGATATAAGAAAAAATAATAATTT
TAAAAAATGGCGTACTAAGCTTGTGGAGTATGAAGGAAAGAAAGTTGGGAATAATGGGATAGTTTTATGGACCTTGATAGAGCTATGGGTGATGGAAAATTCTTACCACA
AAAGAATTTGGACCAAAAAAATTGATTTTGTAGGGTCTATGCCTATGACTCTTTATGGATTGAATATTTTGATGACGTGGTTATATAATAATAATGTGATGTTCTCTAGT
ATAGAGATGGGGAGTGTAATTGCAAGAACTTGGAACATAGTCATTATAGTGTGCCGACGATGGTGTTTCCATTCGGTCGGATTT
Protein sequenceShow/hide protein sequence
NETFIFTFDFYTETWSKITIPDTIINEYEDIRKNNNFKKWRTKLVEYEGKKVGNNGIVLWTLIELWVMENSYHKRIWTKKIDFVGSMPMTLYGLNILMTWLYNNNVMFSS
IEMGSVIARTWNIVIIVCRRWCFHSVGF