; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G018050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G018050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionML domain-containing protein
Genome locationchr03:29488281..29491166
RNA-Seq ExpressionLsi03G018050
SyntenyLsi03G018050
Gene Ontology termsGO:0015918 - sterol transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR003172 - MD-2-related lipid-recognition domain
IPR014756 - Immunoglobulin E-set
IPR039670 - Sterol transport protein NPC2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136524.1 MD-2-related lipid-recognition protein ROSY1 [Cucumis sativus]4.2e-8092.26Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEPIFQMKLIFP LLWLCF PQFSF+TR+QLCDETAKYDI VKGVEISP+P+VRGHPTNM FNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y  GDFALPPLRTPLAFFLPGSYHMQITIVDGDDN+L CFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

XP_008442939.1 PREDICTED: uncharacterized protein LOC103486693 [Cucumis melo]4.2e-8092.9Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP FQMKLIFP LLWLCF PQFSFATRVQLCDETA+YDI VKGVEISPSPIVRGHPTNMTFNL+IG PIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y  GDFALPPLRTPLAFFLPGSYHMQITIVDGDDN+L CFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

XP_022151451.1 uncharacterized protein LOC111019382 [Momordica charantia]1.4e-7589.68Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP FQMKLIF  L++LC V QFS AT VQLCDETA YDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y+FGDFAL PLRTPLAFF PGSYHMQI IVDGDDN+L CFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

XP_022983145.1 uncharacterized protein LOC111481784 [Cucurbita maxima]8.2e-7689.68Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP   MKLIF +LLWLCFV QFSFATRVQLCDETAKYDIMVKGV+ISPSPIVRG P  MTFNLIIGKPIIAGKMVVDISYFGWH+Y DSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y+FGDFAL PL+TPLAFFLPGSYHMQITIVDGDDN+LACFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

XP_038905833.1 uncharacterized protein LOC120091785 [Benincasa hispida]6.4e-8193.55Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP FQMKLIFPILLWLCFVPQFSFAT+VQLCDETAKYD+ VKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYS+SHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y+FGDFALPP RTPLAFFLPGSYHMQITIVDGDDN+L CF FDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

TrEMBL top hitse value%identityAlignment
A0A1S3B7M8 uncharacterized protein LOC1034866932.0e-8092.9Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP FQMKLIFP LLWLCF PQFSFATRVQLCDETA+YDI VKGVEISPSPIVRGHPTNMTFNL+IG PIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y  GDFALPPLRTPLAFFLPGSYHMQITIVDGDDN+L CFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

A0A5D3DP69 Putative phosphatidylglycerol/phosphatidylinositol transfer protein2.0e-8092.9Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP FQMKLIFP LLWLCF PQFSFATRVQLCDETA+YDI VKGVEISPSPIVRGHPTNMTFNL+IG PIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y  GDFALPPLRTPLAFFLPGSYHMQITIVDGDDN+L CFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

A0A6J1DDJ6 uncharacterized protein LOC1110193826.7e-7689.68Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP FQMKLIF  L++LC V QFS AT VQLCDETA YDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y+FGDFAL PLRTPLAFF PGSYHMQI IVDGDDN+L CFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

A0A6J1FAL9 uncharacterized protein LOC1114423321.7e-7487.74Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        ME    MKLI  +LLWLCFV QFSFATRVQLCDETAKYDIMVKGV+ISPSPIVRG P NMTFNLIIGKPI+AGKMVVDISYFGWH+Y DSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y+FGDFAL PL+TPLAFFLPGSYHMQIT+VDGDDN+LACFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

A0A6J1J1A9 uncharacterized protein LOC1114817843.9e-7689.68Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP   MKLIF +LLWLCFV QFSFATRVQLCDETAKYDIMVKGV+ISPSPIVRG P  MTFNLIIGKPIIAGKMVVDISYFGWH+Y DSHDICVETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS
        Y+FGDFAL PL+TPLAFFLPGSYHMQITIVDGDDN+LACFGFDYELVIASLFGDS
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS

SwissProt top hitse value%identityAlignment
Q9AST8 MD-2-related lipid-recognition protein ROSY13.0e-0428.24Show/hide
Query:  IFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMV-VDISYFGWHIYSDSHDICVETSCPYT
        I   +L+  +L+ L F P      + Q CD   +Y + V  VEISP P+ R     +T   +  K I  G  V + ++   + + + S+ +C  T+CP  
Subjt:  IFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMV-VDISYFGWHIYSDSHDICVETSCPYT

Query:  FGD--FALPPLRTPLAFFLPGSYHMQITIVD
         G     LP + TP        Y + I+I D
Subjt:  FGD--FALPPLRTPLAFFLPGSYHMQITIVD

Arabidopsis top hitse value%identityAlignment
AT2G16005.1 MD-2-related lipid recognition domain-containing protein2.1e-0528.24Show/hide
Query:  IFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMV-VDISYFGWHIYSDSHDICVETSCPYT
        I   +L+  +L+ L F P      + Q CD   +Y + V  VEISP P+ R     +T   +  K I  G  V + ++   + + + S+ +C  T+CP  
Subjt:  IFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMV-VDISYFGWHIYSDSHDICVETSCPYT

Query:  FGD--FALPPLRTPLAFFLPGSYHMQITIVD
         G     LP + TP        Y + I+I D
Subjt:  FGD--FALPPLRTPLAFFLPGSYHMQITIVD

AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein8.8e-2838.76Show/hide
Query:  ATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYTFGDFALPPLRTPLAFFLPGSYHM
        AT V  CD   +Y++ V+GV+I+P PI RG P     +      I +GK+V+++SYFGWHI+S++HD+C ETSCP   GDF +   +    +  PGSY +
Subjt:  ATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYTFGDFALPPLRTPLAFFLPGSYHM

Query:  QITIVDGDDNQLACFGFDYELVIASLFGD
        ++ ++DG   +L C  F +++   S   D
Subjt:  QITIVDGDDNQLACFGFDYELVIASLFGD

AT3G11780.2 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein1.4e-2536.05Show/hide
Query:  ATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYTFGDF------ALPPLRTP-----
        AT V  CD   +Y++ V+GV+I+P PI RG P     +      I +GK+V+++SYFGWHI+S++HD+C ETSCP   GDF       LP    P     
Subjt:  ATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYTFGDF------ALPPLRTP-----

Query:  -------LAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGD
                 F + GSY +++ ++DG   +L C  F +++   S   D
Subjt:  -------LAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGD

AT3G44100.1 MD-2-related lipid recognition domain-containing protein4.1e-1731.97Show/hide
Query:  IFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYTF
        I Q + +  +LL + F+P    AT    CD+     + V GV+ISP P+V G           G+ I  GK+V+ + Y G  +++++HD+C ET+CP   
Subjt:  IFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYTF

Query:  GDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIAS
        G F L   +T  +   PG+Y +++TI D +  +L C  F +++ + S
Subjt:  GDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIAS

AT5G06480.1 Immunoglobulin E-set superfamily protein4.4e-2735.71Show/hide
Query:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        M  IF +  +  + L L   P    A  V  C+E A+Y++ VK V+ISP+PI  G P   T +   G+ I  GK+V+++SYFGWH++S++HD+C ETSCP
Subjt:  MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGD
           GDF +   +    +  PGSY +++ ++D    +L C  F +++ + +   D
Subjt:  YTFGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCCATTTTTCAGATGAAGCTCATTTTCCCAATTCTTCTTTGGTTGTGTTTTGTTCCACAGTTCTCCTTCGCCACTCGAGTCCAACTCTGCGATGAGACAGCCAA
GTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCATAGTTAGGGGCCATCCAACAAATATGACCTTCAATCTAATTATAGGTAAGCCAATCATTGCAGGAA
AAATGGTAGTTGATATTTCATATTTCGGATGGCACATATATAGTGACAGCCATGACATTTGTGTTGAGACGTCCTGCCCTTACACGTTTGGTGATTTTGCACTCCCTCCA
TTGCGAACTCCTCTGGCATTCTTTTTACCTGGTTCATATCATATGCAGATAACCATTGTTGATGGAGATGATAATCAACTTGCATGCTTTGGCTTTGATTATGAATTGGT
GATTGCATCATTATTTGGAGATAGCTAA
mRNA sequenceShow/hide mRNA sequence
GGCTTGCTTCGCTTCTTCTCAACCTCTGTTCATATTTTTTGAAATTTTCTCTTCAGCCCATCTGCTAAACCCCGACGAAGAAGGGATTCTTCTCACTCAAAAATGGCAAT
CATATCTTTCAGTTTCTCCCATTCTACTCCACCGAACCCCCGTCTTTTTCGCAACCCCAGAGCTTCATTATTAGAAATTGTCAAGTTTTTCTTCAAATCTGTTCTTACAG
AGCTCGAAAAAGAGCATTTCCATGGAACCCATTTTTCAGATGAAGCTCATTTTCCCAATTCTTCTTTGGTTGTGTTTTGTTCCACAGTTCTCCTTCGCCACTCGAGTCCA
ACTCTGCGATGAGACAGCCAAGTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCATAGTTAGGGGCCATCCAACAAATATGACCTTCAATCTAATTATAG
GTAAGCCAATCATTGCAGGAAAAATGGTAGTTGATATTTCATATTTCGGATGGCACATATATAGTGACAGCCATGACATTTGTGTTGAGACGTCCTGCCCTTACACGTTT
GGTGATTTTGCACTCCCTCCATTGCGAACTCCTCTGGCATTCTTTTTACCTGGTTCATATCATATGCAGATAACCATTGTTGATGGAGATGATAATCAACTTGCATGCTT
TGGCTTTGATTATGAATTGGTGATTGCATCATTATTTGGAGATAGCTAA
Protein sequenceShow/hide protein sequence
MEPIFQMKLIFPILLWLCFVPQFSFATRVQLCDETAKYDIMVKGVEISPSPIVRGHPTNMTFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYTFGDFALPP
LRTPLAFFLPGSYHMQITIVDGDDNQLACFGFDYELVIASLFGDS