; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G018070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G018070
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCSL zinc finger protein
Genome locationchr03:29498801..29501289
RNA-Seq ExpressionLsi03G018070
SyntenyLsi03G018070
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR044248 - Diphthamide biosynthesis protein 3/4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136522.1 uncharacterized protein LOC101209667 [Cucumis sativus]4.3e-6287.59Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M IS L PA  VL+LLV AVV+EASDNNRVFSPCTDTTVE SDGFTLGFAFATEQKF FNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLT+NTS 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVSSF+PSSNGYMVAFAGRKYAARSPPIFVAD+QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

XP_008442938.1 PREDICTED: uncharacterized protein LOC103486692 [Cucumis melo]1.1e-6086.9Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M IS   PA AVL+LLV AV+VEA DNNRVFSPCTDTTVE SDGFTLGFAFAT+QKF FNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTS 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVSSF+PSSNGYMVAFAGRKYAARSPPIFVAD+QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

XP_022983083.1 uncharacterized protein LOC111481736 [Cucurbita maxima]4.5e-5984.83Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M ISDL P   VLLLLV AVVVEA DNNRVFSPC DTTVEKSDGFTLG AFATEQKF+FNKTL+LSPCDSRL LTNGN+LISVFRPKVDEISLLTVNT+ 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVS+FNPSSNGYMVAFAGRKYAARSPPIFV+D QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

XP_023528901.1 uncharacterized protein LOC111791684 [Cucurbita pepo subsp. pepo]5.9e-5984.83Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M ISDL P   VLLLLV  VVVEA DNNRVFSPC DTTVEKSDGFTLG AFATEQKF+FNKTL+LSPCDSRL LTNGN+LISVFRPKVDEISLLTVNT+ 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVSSFNPSSNGYMVAFAGRKYAARSPPIFV+D QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

XP_038903347.1 uncharacterized protein LOC120089965 [Benincasa hispida]1.3e-6187.59Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M ISDL PA  VLLL V AVVVEA DNNRVFS CTDTTVEKSDGFTLGFAFATEQKF+FNKTL+LSPCDSRL LTNGNSLISVFRPKVDEISLLT+NTS 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVSSF+PSSNGYMVAFAGRKYAARSPPIFVAD+QHTVTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LGU1 Uncharacterized protein2.1e-6287.59Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M IS L PA  VL+LLV AVV+EASDNNRVFSPCTDTTVE SDGFTLGFAFATEQKF FNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLT+NTS 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVSSF+PSSNGYMVAFAGRKYAARSPPIFVAD+QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

A0A1S3B6Y8 uncharacterized protein LOC1034866925.2e-6186.9Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M IS   PA AVL+LLV AV+VEA DNNRVFSPCTDTTVE SDGFTLGFAFAT+QKF FNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTS 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVSSF+PSSNGYMVAFAGRKYAARSPPIFVAD+QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

A0A5A7TKL4 Uncharacterized protein5.2e-6186.9Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M IS   PA AVL+LLV AV+VEA DNNRVFSPCTDTTVE SDGFTLGFAFAT+QKF FNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTS 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVSSF+PSSNGYMVAFAGRKYAARSPPIFVAD+QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

A0A6J1F5Z3 uncharacterized protein LOC1114424143.7e-5984.83Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M ISDL P   VLLLLV AVVVEA DNNRVFSPC DTTVEKSDGFTLG AFATEQKF+FNKTL+LSPCDSRL LTNGN+LISVFRPKVDEISLLTVNT+ 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVSSFNPSS+GYMVAFAGRKYAARSPPIFV+D QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

A0A6J1J6R6 uncharacterized protein LOC1114817362.2e-5984.83Show/hide
Query:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS
        M ISDL P   VLLLLV AVVVEA DNNRVFSPC DTTVEKSDGFTLG AFATEQKF+FNKTL+LSPCDSRL LTNGN+LISVFRPKVDEISLLTVNT+ 
Subjt:  MGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSS

Query:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SVS+FNPSSNGYMVAFAGRKYAARSPPIFV+D QH VTSFTL ++
Subjt:  SVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G15910.1 CSL zinc finger domain-containing protein5.5e-3151.09Show/hide
Query:  VLLLLVMAV--VVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSSSVSSFNPS-
        +++++VM V   V A+DNN V+SPC+DT + K DGFT+G A ++++ F  ++ +QLSPCD+RLGL    + +++FRPKVDEISLL+++T    S FNPS 
Subjt:  VLLLLVMAV--VVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSSSVSSFNPS-

Query:  SNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        + G+MV FAG KYAARS P+ VAD  +T+T+FTL ++
Subjt:  SNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

AT3G11800.1 unknown protein1.7e-3559.03Show/hide
Query:  FAVLLLLVMAV----VVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLF---NKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSSSV
        F +L  L  AV    + EA DNN+V+SPC+D+TV   DGFT G AFA +  F     +K++Q SPCD R    NGNS ++VFRPKVDEI+LLT+NTSSS 
Subjt:  FAVLLLLVMAV----VVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLF---NKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSSSV

Query:  SSFNP-SSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
        SSF P +S GYMVAFAG KYAARS PI VAD  H VTSFTL ++
Subjt:  SSFNP-SSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ

AT3G44150.1 unknown protein6.5e-3252.94Show/hide
Query:  AVLLLLVMAVVVEASDN-NRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSSSVSSFNPSS
        AV+L + +      S N N ++SPC+DT +++SDGFT G AF++   F  N+T+ LSPCD RL L   NS  SVFRPK+DEISLL++NTS   + F  + 
Subjt:  AVLLLLVMAVVVEASDN-NRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSSSVSSFNPSS

Query:  NGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ
         GYMVAFAGRKYAARS P F+A+    VTSFTL ++
Subjt:  NGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGTTTCTATCTCCAAGCTTCAATTTCCAATTCGACCATGGGGATTTCCGATCTCCCACCGGCGTTCGCCGTGCTGCTTCTGTTGGTGATGGCGGTGGTTGTCGA
AGCTAGCGACAACAACCGAGTTTTCTCACCTTGCACGGACACAACTGTTGAGAAGTCCGACGGCTTCACCTTAGGGTTTGCTTTTGCGACGGAGCAGAAGTTTCTCTTCA
ATAAAACCTTGCAGTTGTCTCCTTGCGACAGCAGGCTCGGTCTTACGAATGGAAATTCTCTGATCTCTGTGTTTAGACCTAAGGTTGATGAGATCTCCCTCCTTACCGTC
AACACTTCTTCCTCTGTGTCTTCCTTCAATCCGTCGTCAAATGGCTATATGGTTGCATTTGCTGGTCGAAAATATGCTGCAAGGTCCCCTCCAATTTTTGTCGCAGATGA
ACAACATACCGTAACCAGCTTTACTCTGTTTGTGCAACAAATTCCTTTGAAATTTTCTTCATTTCTCATTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGTTTCTATCTCCAAGCTTCAATTTCCAATTCGACCATGGGGATTTCCGATCTCCCACCGGCGTTCGCCGTGCTGCTTCTGTTGGTGATGGCGGTGGTTGTCGA
AGCTAGCGACAACAACCGAGTTTTCTCACCTTGCACGGACACAACTGTTGAGAAGTCCGACGGCTTCACCTTAGGGTTTGCTTTTGCGACGGAGCAGAAGTTTCTCTTCA
ATAAAACCTTGCAGTTGTCTCCTTGCGACAGCAGGCTCGGTCTTACGAATGGAAATTCTCTGATCTCTGTGTTTAGACCTAAGGTTGATGAGATCTCCCTCCTTACCGTC
AACACTTCTTCCTCTGTGTCTTCCTTCAATCCGTCGTCAAATGGCTATATGGTTGCATTTGCTGGTCGAAAATATGCTGCAAGGTCCCCTCCAATTTTTGTCGCAGATGA
ACAACATACCGTAACCAGCTTTACTCTGTTTGTGCAACAAATTCCTTTGAAATTTTCTTCATTTCTCATTAATTAA
Protein sequenceShow/hide protein sequence
MTSFYLQASISNSTMGISDLPPAFAVLLLLVMAVVVEASDNNRVFSPCTDTTVEKSDGFTLGFAFATEQKFLFNKTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTV
NTSSSVSSFNPSSNGYMVAFAGRKYAARSPPIFVADEQHTVTSFTLFVQQIPLKFSSFLIN