CuGenDBv2

Gene ID	Lsi03G018240
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	mediator of RNA polymerase II transcription subunit 27
Genome location	chr03:29761419..29766288
RNA-Seq Expression	Lsi03G018240
Synteny	Lsi03G018240
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component) GO:0003713 - transcription coactivator activity (molecular function)
InterPro domains	IPR021627 - Mediator complex, subunit Med27

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136512.1 mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativus]

6.3e-205

88.15

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Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQP+QG TATVSP+T   HSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHLEDEN SNNEPALKKPCFSH VTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLSDIL+CMEKE+PELKIFTYERLDWLK ASALPSQANENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYF+GNQ KAALYPLLLWICSYQNLFSKACSKCGR LSVNKQ+DLLLPPAVRPYKQFC+SK SS VP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSE
        ITSLKDQKLD VQAFHIDCFSE
Subjt:  ITSLKDQKLDPVQAFHIDCFSE

XP_008442914.1 PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo]

9.8e-206

88.15

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Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQP+QG TATVSPNT   HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHLEDEN SNNEPALKKPCFSH VTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLSDIL+C+EKE+PELKIFTYERLDWLK ASALPSQANENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHP+GSVEPDA+A
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYF+GNQ KAALYPLLLWICSYQNLFSKACSKCGR LSVNKQ+DLLLPP VRPYKQFC+SK SSAVP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSE
        ITSLKDQKLD VQAFHIDCFSE
Subjt:  ITSLKDQKLDPVQAFHIDCFSE

XP_022940393.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]

1.2e-200

86.52

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Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHL++ENGSN EPA KKPCFSH VTDVKQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTCMEKE+P+LKIFTYERLDWLK ASALPSQANENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYFIG QAKAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQ+DLLLPPA+RPYKQFC+SKISS VP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSEL
        +TSLKDQKLD VQAFHI CF+EL
Subjt:  ITSLKDQKLDPVQAFHIDCFSEL

XP_023539656.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo]

3.6e-200

86.52

Show/hide

Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHL+DENGSN EPA KKPCFSH VTDVKQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTC+EKE+P+LKIFTYERLDWLK ASAL SQANENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYFIG QAKAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQ+DLLLPPA+RPYKQFC+SKISSAVP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSEL
        +TSLKDQKLD VQAFHI CF+EL
Subjt:  ITSLKDQKLDPVQAFHIDCFSEL

XP_038904949.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida]

1.5e-214

91.69

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Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQQPAQG TATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHLEDENGSNNEPALKKPCFSH VTDVKQNELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLS+ILTCMEKE+PELKIFTYERLDWLK ASALPSQANENSIG LKEHSYHSPRMSPGSLGATP DKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYF+GNQAKAALYPLLLWICSYQNLFSKACSKCG+LLSVNKQ+DLLLPPAVRPYKQFC+SK SS+VP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFS
        ITSLKDQKLD VQAFHIDCFS
Subjt:  ITSLKDQKLDPVQAFHIDCFS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGT1 Uncharacterized protein

3.1e-205

88.15

Show/hide

Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQP+QG TATVSP+T   HSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHLEDEN SNNEPALKKPCFSH VTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLSDIL+CMEKE+PELKIFTYERLDWLK ASALPSQANENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYF+GNQ KAALYPLLLWICSYQNLFSKACSKCGR LSVNKQ+DLLLPPAVRPYKQFC+SK SS VP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSE
        ITSLKDQKLD VQAFHIDCFSE
Subjt:  ITSLKDQKLDPVQAFHIDCFSE

A0A1S3B7L6 mediator of RNA polymerase II transcription subunit 27

4.7e-206

88.15

Show/hide

Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQP+QG TATVSPNT   HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHLEDEN SNNEPALKKPCFSH VTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DSRSLSDIL+C+EKE+PELKIFTYERLDWLK ASALPSQANENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHP+GSVEPDA+A
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYF+GNQ KAALYPLLLWICSYQNLFSKACSKCGR LSVNKQ+DLLLPP VRPYKQFC+SK SSAVP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSE
        ITSLKDQKLD VQAFHIDCFSE
Subjt:  ITSLKDQKLDPVQAFHIDCFSE

A0A6J1DC62 mediator of RNA polymerase II transcription subunit 27

2.2e-195

83.18

Show/hide

Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQQPAQG TATVSPNTA PHS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHL+DE+  N EPALKKPCFSH VT++KQ+ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        + R+LSDILTCMEKE+P+LKIFTYERLDWLK A AL SQAN+NSIGALKEH+YHSPRM PGSL A+  DK  VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FF+PDE                    EHAATVLQYF+G Q KAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQ+DLLLPPA+RPYKQFC+S++ SAVP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSE
        I+SLKDQ+ DPVQAFHI CFSE
Subjt:  ITSLKDQKLDPVQAFHIDCFSE

A0A6J1FP59 mediator of RNA polymerase II transcription subunit 27

6.0e-201

86.52

Show/hide

Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHL++ENGSN EPA KKPCFSH VTDVKQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTCMEKE+P+LKIFTYERLDWLK ASALPSQANENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYFIG QAKAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQ+DLLLPPA+RPYKQFC+SKISS VP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSEL
        +TSLKDQKLD VQAFHI CF+EL
Subjt:  ITSLKDQKLDPVQAFHIDCFSEL

A0A6J1KZZ9 mediator of RNA polymerase II transcription subunit 27

1.7e-200

86.29

Show/hide

Query:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
        MRQTQ PAQG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN
        LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPHL++ENGSN EPA KKPCFSH VTDVKQ ELN
Subjt:  LEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELN

Query:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
        DS SLSDILTCMEKE+P+LKIFTYERLDWLK AS LPSQANENSIG LKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Subjt:  DSRSLSDILTCMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA

Query:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP
        FFSPDE                    EHAATVLQYFIG QAKAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQ+DLLLPPA+RPYKQFC+SKISSAVP
Subjt:  FFSPDE--------------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVP

Query:  ITSLKDQKLDPVQAFHIDCFSEL
        +TSLKDQKLD VQAFHI CF+EL
Subjt:  ITSLKDQKLDPVQAFHIDCFSEL

SwissProt top hits

e value

%identity

Alignment

Q8RWM3 Mediator of RNA polymerase II transcription subunit 27

4.7e-110

54.52

Show/hide

Query:  HTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSES
        H + +  N A   +  S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ES
Subjt:  HTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSES

Query:  LLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELNDSRSLSDILT
        L SRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPH++D  G   EP+ KK   SH + +  + E  D ++L DI +
Subjt:  LLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELNDSRSLSDILT

Query:  CMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDE----
         +EK +P +K+ TY RL+WLK A++LP   +++   A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE    
Subjt:  CMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDE----

Query:  ----------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVPITSLKDQKLD
                        EHAAT LQYF+G     ALY LLLWICS++++FSK C+KCGRLL+++K++ L+LPP  R Y++         +P+       LD
Subjt:  ----------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVPITSLKDQKLD

Query:  PVQAFHIDC
          +A+H  C
Subjt:  PVQAFHIDC

Arabidopsis top hits

e value

%identity

Alignment

AT3G09180.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

3.3e-111

54.52

Show/hide

Query:  HTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSES
        H + +  N A   +  S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ES
Subjt:  HTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSES

Query:  LLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELNDSRSLSDILT
        L SRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAF DQKRRFFPH++D  G   EP+ KK   SH + +  + E  D ++L DI +
Subjt:  LLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELNDSRSLSDILT

Query:  CMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDE----
         +EK +P +K+ TY RL+WLK A++LP   +++   A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE    
Subjt:  CMEKELPELKIFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDE----

Query:  ----------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVPITSLKDQKLD
                        EHAAT LQYF+G     ALY LLLWICS++++FSK C+KCGRLL+++K++ L+LPP  R Y++         +P+       LD
Subjt:  ----------------EHAATVLQYFIGNQAKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVPITSLKDQKLD

Query:  PVQAFHIDC
          +A+H  C
Subjt:  PVQAFHIDC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGACAGACTCAGCAGCCAGCGCAGGGCCATACTGCGACGGTGAGCCCTAACACTGCTCCCCCTCACTCTCCCGCCTCTGCAGACGACGCGCCGCCGAAGCAGGTCGC
ACTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTCATCGCCGACATCAGGCTCGGCGCTGATCGCCTTCTCGAAGCCCTCTGCGTCACTGCCCAGCCTCATCAAAGCA
CTAAGCCCCTCCACTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTTGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCCGGTGTTCTCAGTGAATCT
CTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCGGTGGTTGCTTATGCTTGGAAGCGTCAATTAGCTGGCCAGGCTGGTGCATC
TGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCATGGACCAGAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGGGTCAAATAATGAGCCTGCTCTGAAGA
AGCCTTGTTTTTCTCATAGAGTGACAGATGTCAAACAAAATGAGCTTAATGATTCTAGATCACTCTCAGATATTCTAACGTGTATGGAAAAGGAACTGCCAGAGCTTAAG
ATTTTCACTTATGAGAGATTGGACTGGTTAAAACATGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAG
GATGAGTCCCGGATCACTTGGTGCTACTCCCACAGATAAAGCTGGTGTGATTGAGTTGGTCATTCCTTCAGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTG
TTGAACCAGATGCTGTCGCTTTCTTTTCTCCCGATGAGGAGCATGCTGCCACGGTGCTGCAGTATTTTATTGGAAATCAAGCAAAAGCAGCTCTATATCCTCTATTGCTT
TGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGTGGACGGCTGCTATCAGTAAACAAACAAACCGATTTACTGTTGCCTCCTGCAGTTCGCCCCTA
CAAACAATTTTGTTCATCAAAAATCTCATCAGCTGTGCCCATAACCTCATTGAAAGACCAGAAGTTGGATCCTGTTCAAGCTTTCCACATTGATTGTTTCTCTGAACTAT
AG

mRNA sequence

Show/hide mRNA sequence

AAATAAAAGGTGAATTTATTATTATTTTAATTGAAAAATATTAGTATTTTAATTTTAAGAAAAGAAAAGGCAGGGTGGAAATTCAGAAATTAGCAGTCGTCTTGGTCACA
CCTCCGAAGGCTTTTGGGGAAAGAAATTGGAAGCAGTGAACATCGGCGGAGGGTAAATGCGACAGACTCAGCAGCCAGCGCAGGGCCATACTGCGACGGTGAGCCCTAAC
ACTGCTCCCCCTCACTCTCCCGCCTCTGCAGACGACGCGCCGCCGAAGCAGGTCGCACTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTCATCGCCGACATCAGGCT
CGGCGCTGATCGCCTTCTCGAAGCCCTCTGCGTCACTGCCCAGCCTCATCAAAGCACTAAGCCCCTCCACTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCC
TTGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCCGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGAT
GGCGCGGTGGTTGCTTATGCTTGGAAGCGTCAATTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCATGGACCAGAAAAGACG
GTTTTTCCCTCATCTTGAAGATGAAAATGGGTCAAATAATGAGCCTGCTCTGAAGAAGCCTTGTTTTTCTCATAGAGTGACAGATGTCAAACAAAATGAGCTTAATGATT
CTAGATCACTCTCAGATATTCTAACGTGTATGGAAAAGGAACTGCCAGAGCTTAAGATTTTCACTTATGAGAGATTGGACTGGTTAAAACATGCTTCAGCCCTTCCCTCT
CAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGTCCCGGATCACTTGGTGCTACTCCCACAGATAAAGCTGGTGTGATTGA
GTTGGTCATTCCTTCAGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTGTTGAACCAGATGCTGTCGCTTTCTTTTCTCCCGATGAGGAGCATGCTGCCACGG
TGCTGCAGTATTTTATTGGAAATCAAGCAAAAGCAGCTCTATATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGTGGACGG
CTGCTATCAGTAAACAAACAAACCGATTTACTGTTGCCTCCTGCAGTTCGCCCCTACAAACAATTTTGTTCATCAAAAATCTCATCAGCTGTGCCCATAACCTCATTGAA
AGACCAGAAGTTGGATCCTGTTCAAGCTTTCCACATTGATTGTTTCTCTGAACTATAGTCACACCTAGCCGTACAGGGTATTGTGGACTGTAATTCACATGTTATACGAC
AGTATGCTCAGAATCAGAAGAGGGCACAGGCTGCTTTGTGATCTTGTGTTGCCTTTGGTGATTCACTAGCATGTGTTGCAATTACATGACGAGGAGTGATATTCATATTA
TTCATAGGAGCCAATCGTGATACCGAAAGAACCATCCAGTTTCTGATGCGGTTATTTTCTGTTGGCTCAAGTACCTTGCCATCGTCAAGGCGCAAAGGTCATTCATTTGC
TTTGATTTGAGCAATTGCTAGTTTTTTCTCAATCTGCTCAGAAGATAAACTTTTGATTATAGAATCATTTGTATCTTGACCCCTCCAGATTCAAGTAAGGATGTTAGCCT
TTTATTAATACGAGCATGTGTATGTGCAATGCTCACAAGTGTTTGGGTCGACGGAAGAAAAGAGTGAATTTTTTTTAGTAGTCAACATTTCAATGGATCGAAAATGTAGT
TATGGAAAACATTTTGTTGTGTTATTAATTATTATTATTATTATTATTTATC

Protein sequence

Show/hide protein sequence

MRQTQQPAQGHTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSES
LLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFMDQKRRFFPHLEDENGSNNEPALKKPCFSHRVTDVKQNELNDSRSLSDILTCMEKELPELK
IFTYERLDWLKHASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDEEHAATVLQYFIGNQAKAALYPLLL
WICSYQNLFSKACSKCGRLLSVNKQTDLLLPPAVRPYKQFCSSKISSAVPITSLKDQKLDPVQAFHIDCFSEL

Lsi03G018240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome