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Lsi03G018510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G018510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUbiquitin-conjugating enzyme E2 variant 1C
Genome locationchr03:29951431..29952851
RNA-Seq ExpressionLsi03G018510
SyntenyLsi03G018510
Gene Ontology termsGO:0006301 - postreplication repair (biological process)
GO:0070534 - protein K63-linked ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043837.1 ubiquitin-conjugating enzyme E2 variant 1C [Cucumis melo var. makuwa]4.5e-7193.53Show/hide
Query:  LNNLYIADCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESK
        L+  Y  DC VEYD DVSPMAELKHLLSVCFPSQF GTSGCWRNLNVEKRALAMTVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESK
Subjt:  LNNLYIADCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESK

Query:  KFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        KFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
Subjt:  KFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

KAA3472019.1 ubiquitin-conjugating enzyme E2 variant 1D [Gossypium australe]1.0e-4671.54Show/hide
Query:  LGTSGCWRNLNVEKR-----------------------ALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY
        LGTS CWR+L+VEK+                       A  +TVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMTCVNH+TG+VESKKFG+LANW+REY
Subjt:  LGTSGCWRNLNVEKR-----------------------ALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY

Query:  TMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TMEDILTQLKKEMAA HNRKLVQPPEGTYF
Subjt:  TMEDILTQLKKEMAAPHNRKLVQPPEGTYF

KAB2631790.1 ubiquitin-conjugating enzyme E2 variant 1D [Pyrus ussuriensis x Pyrus communis]3.3e-4575Show/hide
Query:  TSGCWRNLNVEKRALAM-----------------------TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTM
        TS CWRNLN EK+ L M                       TVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVE KKFGLLANWQREYTM
Subjt:  TSGCWRNLNVEKRALAM-----------------------TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTM

Query:  EDILTQLKKEMAAPHNRKLVQPPE
        EDILTQLKKEM APHNRKLVQPPE
Subjt:  EDILTQLKKEMAAPHNRKLVQPPE

XP_004136503.1 ubiquitin-conjugating enzyme E2 variant 1C [Cucumis sativus]5.6e-4598.86Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

XP_022144653.1 ubiquitin-conjugating enzyme E2 variant 1C [Momordica charantia]1.9e-45100Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

TrEMBL top hitse value%identityAlignment
A0A5A7TPU5 Ubiquitin-conjugating enzyme E2 variant 1C2.2e-7193.53Show/hide
Query:  LNNLYIADCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESK
        L+  Y  DC VEYD DVSPMAELKHLLSVCFPSQF GTSGCWRNLNVEKRALAMTVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESK
Subjt:  LNNLYIADCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESK

Query:  KFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        KFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
Subjt:  KFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

A0A5B6VRJ3 Ubiquitin-conjugating enzyme E2 variant 1D4.9e-4771.54Show/hide
Query:  LGTSGCWRNLNVEKR-----------------------ALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY
        LGTS CWR+L+VEK+                       A  +TVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMTCVNH+TG+VESKKFG+LANW+REY
Subjt:  LGTSGCWRNLNVEKR-----------------------ALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY

Query:  TMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TMEDILTQLKKEMAA HNRKLVQPPEGTYF
Subjt:  TMEDILTQLKKEMAAPHNRKLVQPPEGTYF

A0A5N5I2A9 Ubiquitin-conjugating enzyme E2 variant 1D1.6e-4575Show/hide
Query:  TSGCWRNLNVEKRALAM-----------------------TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTM
        TS CWRNLN EK+ L M                       TVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVE KKFGLLANWQREYTM
Subjt:  TSGCWRNLNVEKRALAM-----------------------TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTM

Query:  EDILTQLKKEMAAPHNRKLVQPPE
        EDILTQLKKEM APHNRKLVQPPE
Subjt:  EDILTQLKKEMAAPHNRKLVQPPE

A0A6J1CTV6 ubiquitin-conjugating enzyme E2 variant 1C9.2e-46100Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

A0A6J1J6I4 ubiquitin-conjugating enzyme E2 variant 1C2.7e-4598.86Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY+MEDILTQLKKEMAAPHNRKLVQPPEGTYF
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

SwissProt top hitse value%identityAlignment
O74983 Ubiquitin-conjugating enzyme spm21.6e-2356.67Show/hide
Query:  AMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        A +VHE RIY LK+ CD +YPD PP V F SR+N+  V+ ETG V   K   L +W+REY+ME +L  LKKEMA+  NRKL QPPEG+ F
Subjt:  AMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A8.1e-3168.24Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        T +EG+I+QLKLFC K+YP+ PP+VRF +R+NM CVN ETGVVE   F +L NW+REYTMEDIL +LKKEM   HNRKL QPPEG
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B1.3e-2864.71Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
        T +EG+I+QLKLFC KDYP+ PP+VRF SR+NM CVN E GVV+   F +L+NW+RE+TMED+L QLKKEM +  NRKL QP EG
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG

Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C1.3e-4489.77Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D1.2e-4288.64Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

Arabidopsis top hitse value%identityAlignment
AT2G36060.1 MMS ZWEI homologue 39.1e-4689.77Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

AT2G36060.2 MMS ZWEI homologue 37.0e-4688.76Show/hide
Query:  MTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Subjt:  MTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

AT2G36060.3 MMS ZWEI homologue 36.5e-4488.64Show/hide
Query:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TG V+SKKFG+LANWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Subjt:  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

AT3G52560.2 ubiquitin E2 variant 1D-46.5e-4487.64Show/hide
Query:  MTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Subjt:  MTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

AT3G52560.4 ubiquitin E2 variant 1D-42.9e-4485.71Show/hide
Query:  LAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
        ++ TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Subjt:  LAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTGCTTTGAGAGGGCAAATCGATTAAATAATTTGTACATTGCAGATTGTAGAGTTGAATATGACGATGATGTCTCGCCAATGGCAGAACTTAAGCATCTTCTAAG
TGTTTGCTTTCCATCACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGACGGTACATGAAGGTAGAATTTATCAGTTGA
AGCTGTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAGAAA
TTTGGACTTCTTGCAAATTGGCAGCGAGAGTATACCATGGAGGATATACTCACACAGCTGAAAAAGGAAATGGCAGCCCCACATAACCGAAAGCTGGTCCAACCTCCAGA
AGGCACCTACTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGTGCTTTGAGAGGGCAAATCGATTAAATAATTTGTACATTGCAGATTGTAGAGTTGAATATGACGATGATGTCTCGCCAATGGCAGAACTTAAGCATCTTCTAAG
TGTTTGCTTTCCATCACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGACGGTACATGAAGGTAGAATTTATCAGTTGA
AGCTGTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAGAAA
TTTGGACTTCTTGCAAATTGGCAGCGAGAGTATACCATGGAGGATATACTCACACAGCTGAAAAAGGAAATGGCAGCCCCACATAACCGAAAGCTGGTCCAACCTCCAGA
AGGCACCTACTTCTAGTTCCAAGATCATGTACACATGATCATATGGTGTGCAATATGCAAATATAGTTTGCAATGCTGTGTAATCCTGTGGAAGTTGAGCACATTCCAGG
AAAGAACCAAAATCTTGATGATGATTTGCATTGCTTCATCGTTGATCAATAGTCTTTTCCTTGTCAATCTGTGTTAAGGGATGGTCTTTTAATGATGGAAATGTGTCAGA
ATACAAATTTACCCAATAGTATTATCTAATTTGAGCGTTGGTTGTTTGCTGCAA
Protein sequenceShow/hide protein sequence
MLCFERANRLNNLYIADCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKK
FGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF