CuGenDBv2

Gene ID	Lsi03G018640
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Embryo defective
Genome location	chr03:30082827..30086605
RNA-Seq Expression	Lsi03G018640
Synteny	Lsi03G018640
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008442875.1 PREDICTED: uncharacterized protein LOC103486641 [Cucumis melo]

1.5e-69

70.33

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Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MKA+IVFRK+YDY+RYDLKEIAFPSSLPDPPHVKKR KLTWH+RFLVLKEASRLYAASWVRDIGP+LRP++YKVEESENKTNS KSAPKEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETLKPALQRVYMTRA+AYRDALK FIDGYQEGIQQVMEKKD S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DSQKGSDKI
Subjt:  DSQKGSDKI

XP_022144745.1 uncharacterized protein LOC111014361 [Momordica charantia]

1.8e-70

71.77

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Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MK RIV RK+YDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTN+AKSA KEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETLKPALQRVYMTRASAYRDALK+FIDGYQEG+QQVMEKK+ S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DSQKGSDKI
Subjt:  DSQKGSDKI

XP_022934670.1 uncharacterized protein LOC111441792 [Cucurbita moschata]

8.4e-68

68.9

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Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MKARIV RK+YDY+RYDLKEIAFPSSLPDPPH KKRRKLTW ERFLVLKEASRLYAASWVRDIGP+LRPNDYKVEESENK NSAKSAPKEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         A+AARGGMETLKPALQRVYMT+ASAYRDALK+FIDGYQEGIQQVMEKK +S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DS+KGS+K+
Subjt:  DSQKGSDKI

XP_023522298.1 uncharacterized protein LOC111786187 [Cucurbita pepo subsp. pepo]

9.0e-70

70.33

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Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MKARIV RK+YDY+RYDLKEIAFPSSLPDPPH KKRRKLTWHERFLVLKEASRLYAASWVRDIGP+LRPNDYKVEESENK NSAKSAPKEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETLKPALQRVYMT+ASAYRDALK+FIDGYQEGIQQVMEKK++S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DSQKGS+K+
Subjt:  DSQKGSDKI

XP_038905860.1 uncharacterized protein LOC120091803 [Benincasa hispida]

1.4e-70

72.25

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Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MK RIV RKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKV+ESENKTNS KSAPKEK PSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETLKPALQRVYMTRASAYRDALK+FIDGYQEGIQ V+EKKDVS
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DSQKGSDKI
Subjt:  DSQKGSDKI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B6Q8 uncharacterized protein LOC103486641

7.4e-70

70.33

Show/hide

Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MKA+IVFRK+YDY+RYDLKEIAFPSSLPDPPHVKKR KLTWH+RFLVLKEASRLYAASWVRDIGP+LRP++YKVEESENKTNS KSAPKEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETLKPALQRVYMTRA+AYRDALK FIDGYQEGIQQVMEKKD S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DSQKGSDKI
Subjt:  DSQKGSDKI

A0A5D3DNS5 Uncharacterized protein

7.0e-68

69.42

Show/hide

Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MKA+IVFRK+YDY+RYDLKEIAFPSSLPDPPHVKKR KLTWH+RFLVLKEASRLYAASWVRDIGP+LRP++YKVEESENKTNS KSAPKEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETLKPALQRVYMTRA+AYRDALK FIDGYQEGIQQVMEKKD S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGS
        DSQKG+
Subjt:  DSQKGS

A0A6J1CSI2 uncharacterized protein LOC111014361

8.8e-71

71.77

Show/hide

Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MK RIV RK+YDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTN+AKSA KEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETLKPALQRVYMTRASAYRDALK+FIDGYQEG+QQVMEKK+ S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DSQKGSDKI
Subjt:  DSQKGSDKI

A0A6J1F8D8 uncharacterized protein LOC111441792

4.1e-68

68.9

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Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MKARIV RK+YDY+RYDLKEIAFPSSLPDPPH KKRRKLTW ERFLVLKEASRLYAASWVRDIGP+LRPNDYKVEESENK NSAKSAPKEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         A+AARGGMETLKPALQRVYMT+ASAYRDALK+FIDGYQEGIQQVMEKK +S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DS+KGS+K+
Subjt:  DSQKGSDKI

A0A6J1J6G3 uncharacterized protein LOC111481775

7.0e-68

68.9

Show/hide

Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MKARIV RK+YDY+RYDLKEIAFPSSLPDPPH KKRRKLTW ERFLVLKEASRLYAASWVRDIGP+LRPNDYKVEESENK NSA+SAPKEKEPSTLEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETLKPALQRVYMT+AS YRDALK+FIDGYQEGIQQVMEKK++S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DSQKGSDKI
        DSQKGS+K+
Subjt:  DSQKGSDKI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G06240.1 embryo defective 2735

1.7e-50

55.45

Show/hide

Query:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD
        MK ++V+RKV DYI YDLKEI  PSSLPDPPHV KRRKLTWHERFLVLKEASRLYAASWVRDIGP+LRPNDYK +        AK A  E EPS LEDL 
Subjt:  MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLD

Query:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS
                                                         AVAARGGMETL+PAL R+YMTRAS Y+DAL SFI GY EG+QQVM+ K  S
Subjt:  SALPTMPVGLLLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVS

Query:  DS
        ++
Subjt:  DS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGGCGAGGATCGTTTTCAGGAAGGTTTATGATTACATTCGGTATGACTTGAAGGAAATTGCATTTCCTTCGTCGTTGCCAGATCCCCCGCATGTAAAGAAGCGTCG
AAAGCTTACATGGCATGAACGATTCTTGGTGTTGAAGGAGGCTTCCAGGTTATATGCTGCAAGCTGGGTGCGGGACATTGGTCCTGACCTGCGACCAAATGACTATAAAG
TAGAAGAAAGCGAAAACAAAACAAATTCAGCAAAAAGTGCGCCTAAAGAGAAAGAACCTTCAACACTTGAAGACCTGGATTCTGCTCTTCCTACTATGCCTGTGGGATTA
TTGCTTACGCTTGTCTCAAATGTTCTCTCCCTTACTCTTGTGCAATACCTCTGTGTCGTGAACCTCACTTTCACTCTTCGATTCAACTTTTTAGTCGATTTAAGAAATGT
TATCTTTGCTGTGGCTGCAAGAGGAGGAATGGAGACACTAAAACCAGCTTTGCAACGGGTGTATATGACTAGAGCTTCTGCATATAGAGACGCTCTAAAAAGTTTTATAG
ATGGGTATCAAGAAGGTATTCAGCAAGTCATGGAGAAAAAGGACGTTTCTGATTCCCAAAAGGGAAGCGATAAAATCTAA

mRNA sequence

Show/hide mRNA sequence

TTTGTATATAAGTTTTTGAGTTTTGGGTCCACTCCTTTTCAGTATTTGGACCATACGCAGTCAGATAGCTTACAAGTCCCAATGGGCCGTTCGATCGGGTTAACCGCGAA
TAGTTTTCCTGATGCGTCTGAATTTTCGAAAAATCTCTCCCTCTTCCGGTAAATCGCCTCCTTCCTTTTGTCGGTGATTTTTTTAATCTGTTGCCATCGTTCTTCTTCTT
CTGCTTCTACTGCCTTCTTCTATGATGGAATGAAGGCGAGGATCGTTTTCAGGAAGGTTTATGATTACATTCGGTATGACTTGAAGGAAATTGCATTTCCTTCGTCGTTG
CCAGATCCCCCGCATGTAAAGAAGCGTCGAAAGCTTACATGGCATGAACGATTCTTGGTGTTGAAGGAGGCTTCCAGGTTATATGCTGCAAGCTGGGTGCGGGACATTGG
TCCTGACCTGCGACCAAATGACTATAAAGTAGAAGAAAGCGAAAACAAAACAAATTCAGCAAAAAGTGCGCCTAAAGAGAAAGAACCTTCAACACTTGAAGACCTGGATT
CTGCTCTTCCTACTATGCCTGTGGGATTATTGCTTACGCTTGTCTCAAATGTTCTCTCCCTTACTCTTGTGCAATACCTCTGTGTCGTGAACCTCACTTTCACTCTTCGA
TTCAACTTTTTAGTCGATTTAAGAAATGTTATCTTTGCTGTGGCTGCAAGAGGAGGAATGGAGACACTAAAACCAGCTTTGCAACGGGTGTATATGACTAGAGCTTCTGC
ATATAGAGACGCTCTAAAAAGTTTTATAGATGGGTATCAAGAAGGTATTCAGCAAGTCATGGAGAAAAAGGACGTTTCTGATTCCCAAAAGGGAAGCGATAAAATCTAAT
AGAAGTTTCTGATAGAATTTATGCTTTATGTAAAAGCTGCAGAATTGTGACTAAAATAGTTTAGAGGATTGGCAGTTCAGTTTCCATTTGTAAAAATTGGTTGAGTTGAG
ATTTTTGTCTTTTTTGCCACTGAAATTTGAAATATATACAGTTTTGAGCAGCTTCTAAATATACACATAAACACAGTCATGAGAAAGAACCTTTATGTTTTCTGCAGAAA
TAGTTGCATGACTCCTATGCTTATTTTCCCCTGCTATTGTCGGTTATTTTGGAGTTCTTAGTGGGTGTTTAGTATTTTCTTACAAGAAGCCGTGGAAATATTAGTGGGAA
GGAAACTGCTTTTGGCTGCTAAATGAATAATTCAGTAGTTCTTTTCTTGTTTCTGCCTATGTGGTCTTCCTTTGGGACTCTCAAGACTTTTTATCTTTGGTCTTTTTGAG
AATTGGATTGTTGATTCAAGAATACTCTCC

Protein sequence

Show/hide protein sequence

MKARIVFRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLDSALPTMPVGL
LLTLVSNVLSLTLVQYLCVVNLTFTLRFNFLVDLRNVIFAVAARGGMETLKPALQRVYMTRASAYRDALKSFIDGYQEGIQQVMEKKDVSDSQKGSDKI

Lsi03G018640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome