; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G018730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G018730
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSenescence regulator
Genome locationchr03:30135891..30136403
RNA-Seq ExpressionLsi03G018730
SyntenyLsi03G018730
Gene Ontology termsNA
InterPro domainsIPR007608 - Senescence regulator S40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442865.1 PREDICTED: uncharacterized protein LOC103486633 [Cucumis melo]2.6e-5981.21Show/hide
Query:  SAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTI
        +A AA LLRHSS SSHHFLHF SS P QT PAVS SDEF+ESELFWTADF  SSNN    SRRISSDD ASSFIPPPNSGILAAL+DD+ Y+RK+RIGTI
Subjt:  SAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTI

Query:  LTRETSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRNVG----REEEE
        LTR+TSITKS SSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPI VPEAMRK RN G    REEEE
Subjt:  LTRETSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRNVG----REEEE

XP_011652020.2 uncharacterized protein LOC105434977 [Cucumis sativus]1.6e-5377.3Show/hide
Query:  AAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTILTR
        AA LL HSS SSHHFLHF SS P  T PA+S SDEF+ESELFWTADF  SSNN    SR+IS+DD ASSFIPPPNSGILAAL+DD +YDRK+RIGTILTR
Subjt:  AAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTILTR

Query:  E-TSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE
        + TSITKS SSS RSIPRPVQSNR+YSQSVPCRKFQQSAPI VPEAMRK RN    V R+EEE
Subjt:  E-TSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE

XP_022943240.1 uncharacterized protein LOC111448027 [Cucurbita moschata]8.2e-4567.74Show/hide
Query:  SSAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGT
        S+AA+A+ LRHSSS SHH+L  FSS PP +  AV++SDEF+ESE+FWT+DF   SNN PF +R+IS++D  SSF   PNSGILAAL+DDAD++ KQRIGT
Subjt:  SSAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGT

Query:  ILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQR
        I+TRETS+  + SSSS RSIP+P+QS+R+YSQS+P RKFQQSAPINVP+AMRKQR
Subjt:  ILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQR

XP_023005734.1 uncharacterized protein LOC111498642 [Cucurbita maxima]1.4e-4464.33Show/hide
Query:  MDSS--AAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQ
        MDSS  AA+A+ LRHSSS SHH+L  FSS PP +   V++SDEF+ESE+FWT+DF   SNN PF +R+IS++D  SSF  PPNSGILAAL+DDAD++ KQ
Subjt:  MDSS--AAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQ

Query:  RIGTILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE
        RIGTI+TRET++  + SSSS R IP+P+QS+++YSQS+P RKFQQSAPINVP+AMRKQRN       EEEE
Subjt:  RIGTILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE

XP_023539527.1 uncharacterized protein LOC111800167 [Cucurbita pepo subsp. pepo]2.9e-4262.57Show/hide
Query:  MDSS--AAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQ
        MDSS  AA+A+ LRHSSS  HH+L  FSS PP +  AV++SDEF+ESE+FWT+DF   SNN PF +R+IS++D  SSF    NSGILAAL+D+AD++ +Q
Subjt:  MDSS--AAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQ

Query:  RIGTILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE
        RIGTI+TRETS+  + SSSS RSIP+P+QS+R+YSQS+P RKFQQSAPINVP++M+KQRN       EEEE
Subjt:  RIGTILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE

TrEMBL top hitse value%identityAlignment
A0A0A0LAY5 Uncharacterized protein7.9e-5477.3Show/hide
Query:  AAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTILTR
        AA LL HSS SSHHFLHF SS P  T PA+S SDEF+ESELFWTADF  SSNN    SR+IS+DD ASSFIPPPNSGILAAL+DD +YDRK+RIGTILTR
Subjt:  AAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTILTR

Query:  E-TSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE
        + TSITKS SSS RSIPRPVQSNR+YSQSVPCRKFQQSAPI VPEAMRK RN    V R+EEE
Subjt:  E-TSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE

A0A1S3B6S2 uncharacterized protein LOC1034866331.3e-5981.21Show/hide
Query:  SAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTI
        +A AA LLRHSS SSHHFLHF SS P QT PAVS SDEF+ESELFWTADF  SSNN    SRRISSDD ASSFIPPPNSGILAAL+DD+ Y+RK+RIGTI
Subjt:  SAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTI

Query:  LTRETSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRNVG----REEEE
        LTR+TSITKS SSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPI VPEAMRK RN G    REEEE
Subjt:  LTRETSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRNVG----REEEE

A0A5A7TLX9 Senescence regulator1.3e-5981.21Show/hide
Query:  SAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTI
        +A AA LLRHSS SSHHFLHF SS P QT PAVS SDEF+ESELFWTADF  SSNN    SRRISSDD ASSFIPPPNSGILAAL+DD+ Y+RK+RIGTI
Subjt:  SAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTI

Query:  LTRETSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRNVG----REEEE
        LTR+TSITKS SSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPI VPEAMRK RN G    REEEE
Subjt:  LTRETSITKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRNVG----REEEE

A0A6J1FXK6 uncharacterized protein LOC1114480274.0e-4567.74Show/hide
Query:  SSAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGT
        S+AA+A+ LRHSSS SHH+L  FSS PP +  AV++SDEF+ESE+FWT+DF   SNN PF +R+IS++D  SSF   PNSGILAAL+DDAD++ KQRIGT
Subjt:  SSAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGT

Query:  ILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQR
        I+TRETS+  + SSSS RSIP+P+QS+R+YSQS+P RKFQQSAPINVP+AMRKQR
Subjt:  ILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQR

A0A6J1L041 uncharacterized protein LOC1114986426.7e-4564.33Show/hide
Query:  MDSS--AAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQ
        MDSS  AA+A+ LRHSSS SHH+L  FSS PP +   V++SDEF+ESE+FWT+DF   SNN PF +R+IS++D  SSF  PPNSGILAAL+DDAD++ KQ
Subjt:  MDSS--AAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQ

Query:  RIGTILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE
        RIGTI+TRET++  + SSSS R IP+P+QS+++YSQS+P RKFQQSAPINVP+AMRKQRN       EEEE
Subjt:  RIGTILTRETSITKS-SSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRN----VGREEEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCTTCCGCCGCCGCCGCCTATCTTCTCCGCCACTCCTCTTCTTCCTCCCACCACTTCCTCCACTTCTTCTCTTCCGCTCCGCCGCAAACTTCCCCCGCCGTCTC
CGCCTCCGACGAGTTCCACGAATCCGAGCTCTTCTGGACTGCCGATTTCGGCTTATCATCCAACAACTGCCCCTTCCCCTCCAGAAGAATCTCCAGCGACGATCACGCAT
CCAGTTTCATCCCTCCTCCAAACTCCGGCATCCTCGCCGCTCTAACTGATGACGCCGATTACGATCGGAAACAGAGAATCGGAACGATTCTGACTCGAGAGACTTCAATA
ACTAAATCCTCGTCGTCGTCGATGCGATCGATTCCGAGGCCGGTTCAGAGTAATAGAGATTATTCTCAATCCGTGCCTTGTAGGAAATTTCAGCAATCGGCTCCGATTAA
CGTGCCGGAAGCGATGAGGAAACAGAGGAATGTAGGGAGGGAGGAGGAGGAGATGTTCCGCCGCATGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTCTTCCGCCGCCGCCGCCTATCTTCTCCGCCACTCCTCTTCTTCCTCCCACCACTTCCTCCACTTCTTCTCTTCCGCTCCGCCGCAAACTTCCCCCGCCGTCTC
CGCCTCCGACGAGTTCCACGAATCCGAGCTCTTCTGGACTGCCGATTTCGGCTTATCATCCAACAACTGCCCCTTCCCCTCCAGAAGAATCTCCAGCGACGATCACGCAT
CCAGTTTCATCCCTCCTCCAAACTCCGGCATCCTCGCCGCTCTAACTGATGACGCCGATTACGATCGGAAACAGAGAATCGGAACGATTCTGACTCGAGAGACTTCAATA
ACTAAATCCTCGTCGTCGTCGATGCGATCGATTCCGAGGCCGGTTCAGAGTAATAGAGATTATTCTCAATCCGTGCCTTGTAGGAAATTTCAGCAATCGGCTCCGATTAA
CGTGCCGGAAGCGATGAGGAAACAGAGGAATGTAGGGAGGGAGGAGGAGGAGATGTTCCGCCGCATGAGATAG
Protein sequenceShow/hide protein sequence
MDSSAAAAYLLRHSSSSSHHFLHFFSSAPPQTSPAVSASDEFHESELFWTADFGLSSNNCPFPSRRISSDDHASSFIPPPNSGILAALTDDADYDRKQRIGTILTRETSI
TKSSSSSMRSIPRPVQSNRDYSQSVPCRKFQQSAPINVPEAMRKQRNVGREEEEMFRRMR