; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G019330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G019330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L24
Genome locationchr03:30754799..30757767
RNA-Seq ExpressionLsi03G019330
SyntenyLsi03G019330
Gene Ontology termsGO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
InterPro domainsIPR000988 - Ribosomal protein L24e-related
IPR011017 - TRASH domain
IPR038630 - Ribosomal protein L24e/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591317.1 putative ribosome biogenesis protein RLP24, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4586.49Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTEETL+AIKKIDKVR
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RESRHIARR
Subjt:  VVRESRHIARR

XP_022950473.1 probable ribosome biogenesis protein RLP24 [Cucurbita moschata]3.3e-4584.68Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSST+Y GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTEETL+AIKKIDKVR
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RE+RHIARR
Subjt:  VVRESRHIARR

XP_022976358.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima]1.1e-4586.49Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTEETL+AIKKIDKVR
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RESRHIARR
Subjt:  VVRESRHIARR

XP_023535971.1 probable ribosome biogenesis protein RLP24 [Cucurbita pepo subsp. pepo]1.1e-4586.49Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTEETL+AIKKIDKVR
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RESRHIARR
Subjt:  VVRESRHIARR

XP_038905540.1 probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida]2.8e-4985.25Show/hide
Query:  KFRLHYYFKKRMRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEET
        KFRL Y  KKRMRLEKCWFCSSTIY GHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTEET
Subjt:  KFRLHYYFKKRMRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEET

Query:  LKAIKKIDKVRVVRESRHIARR
        LKAIKKIDKVR  RESRHIARR
Subjt:  LKAIKKIDKVRVVRESRHIARR

TrEMBL top hitse value%identityAlignment
A0A0A0LQI2 TRASH domain-containing protein7.1e-4677.24Show/hide
Query:  KKFRLHYYFKKRMRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEE
        +KFR+ Y  KKRMRLEKCWFCSS IY GHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+T+         R+RP +YDRN+TE+
Subjt:  KKFRLHYYFKKRMRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEE

Query:  TLKAIKKIDKVRVVRESRHIARR
        TLKAIKKIDK+R+ RESRHIARR
Subjt:  TLKAIKKIDKVRVVRESRHIARR

A0A6J1GEZ5 probable ribosome biogenesis protein RLP241.6e-4584.68Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSST+Y GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTEETL+AIKKIDKVR
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RE+RHIARR
Subjt:  VVRESRHIARR

A0A6J1ILW2 probable ribosome biogenesis protein RLP245.4e-4686.49Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTEETL+AIKKIDKVR
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RESRHIARR
Subjt:  VVRESRHIARR

A0A6J1KWV2 probable ribosome biogenesis protein RLP241.6e-4584.68Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSST+Y GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTEETL+AIKKIDKVR
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RE+RHIARR
Subjt:  VVRESRHIARR

A0A7J7FS01 TRASH domain-containing protein2.1e-4584.68Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSST+Y GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHGKD+TQ         RNRPERYDRNLTE TLKAIKKIDKVR
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ---------RNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
        V RE+RHIA+R
Subjt:  VVRESRHIARR

SwissProt top hitse value%identityAlignment
O22165 Probable ribosome biogenesis protein RLP242.4e-4376.58Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HGKD+T         +RNRPERYDRN+TE TL AIKKI K+R
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RE++HI  R
Subjt:  VVRESRHIARR

Q10353 Ribosome biogenesis protein rlp249.0e-3056.25Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDI----------TQRNRPERYDRNLTEETLKAIKKIDKV
        MR+  C+FCS  +Y GHGI FVRND+K+FRFCRSKCHKNFKMKRNPRKV WTKAYR  HGK++           +RN P RYDRN+   TL A+K++ +V
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDI----------TQRNRPERYDRNLTEETLKAIKKIDKV

Query:  RVVRESRHIARR
           RE     +R
Subjt:  RVVRESRHIARR

Q3SZ12 Probable ribosome biogenesis protein RLP245.8e-2952.25Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR
        MR+EKC+FCS  IY GHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R   GK++T         +RN P +Y R L  +T+ A+K++++++
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          R+++ I  R
Subjt:  VVRESRHIARR

Q7ZTZ2 Probable ribosome biogenesis protein RLP245.8e-2952.25Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR
        MR+EKC+FCS+ +Y GHG+ FVRND K+FRFCRSKCHKNFK KRNPRK +WTKA+R   GK++T         +RN P +Y+R L  +T++A++K++ ++
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          R++R I  R
Subjt:  VVRESRHIARR

Q86B05 Probable ribosome biogenesis protein RLP243.4e-2954.05Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR
        MR+EKC+FCS  +Y GHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R L+GK++T         +RNRP +YDR L   T+ A+ ++ K++
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RE      R
Subjt:  VVRESRHIARR

Arabidopsis top hitse value%identityAlignment
AT2G44860.1 Ribosomal protein L24e family protein1.7e-4476.58Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HGKD+T         +RNRPERYDRN+TE TL AIKKI K+R
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RE++HI  R
Subjt:  VVRESRHIARR

AT2G44860.2 Ribosomal protein L24e family protein1.7e-4476.58Show/hide
Query:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR
        MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HGKD+T         +RNRPERYDRN+TE TL AIKKI K+R
Subjt:  MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDIT---------QRNRPERYDRNLTEETLKAIKKIDKVR

Query:  VVRESRHIARR
          RE++HI  R
Subjt:  VVRESRHIARR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGAATTGGGCTGGTTCGAACCCAGCCCAGTCCATTATCCTCTTCCTCTCTTTCCTGCCTTCACGCCGGTGACCGCCGCACGCACAATCTCGTTGAACGAATGGCCGCG
TCTCGCCCATCGCCGTTCTAGTGTCGCTCCGGCAGCCGCTTCTTGTAAATTTCCCTCATCCATCGATCTCTCTCAGCCGTTCCTCGCGCCGCCATCCGACGTCAGCCGTT
TGTCGTCATCACACAGGAGAGCTGTAAATTCTCTTCGATTTTGCGTTTTTCTCTGCCAAATTTCTGTTGATGTTGGTGTTGTGTTGGATTGGGTTTGGCCGTTTGGGTAT
GAGGGAAATTTATGGTATTCAGTGTATCAAATTTTGCCCTTCGATCACAACAAATGCTCAAGCCCGTCTTCTCAGTCGGCGAAAATCATTATCGTCGCCAAAAAATTTAG
GCTTCATTATTATTTCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCAAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTT
TTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACTAAGGCATATAGAGGGTTGCATGGAAAGGATATTACACAG
CGCAATAGGCCGGAGAGATATGACAGGAATCTCACCGAAGAGACATTGAAGGCTATTAAGAAGATTGATAAAGTCAGAGTGGTTAGGGAGTCAAGGCACATTGCACGGAG
GTTT
mRNA sequenceShow/hide mRNA sequence
TATGAATTGGGCTGGTTCGAACCCAGCCCAGTCCATTATCCTCTTCCTCTCTTTCCTGCCTTCACGCCGGTGACCGCCGCACGCACAATCTCGTTGAACGAATGGCCGCG
TCTCGCCCATCGCCGTTCTAGTGTCGCTCCGGCAGCCGCTTCTTGTAAATTTCCCTCATCCATCGATCTCTCTCAGCCGTTCCTCGCGCCGCCATCCGACGTCAGCCGTT
TGTCGTCATCACACAGGAGAGCTGTAAATTCTCTTCGATTTTGCGTTTTTCTCTGCCAAATTTCTGTTGATGTTGGTGTTGTGTTGGATTGGGTTTGGCCGTTTGGGTAT
GAGGGAAATTTATGGTATTCAGTGTATCAAATTTTGCCCTTCGATCACAACAAATGCTCAAGCCCGTCTTCTCAGTCGGCGAAAATCATTATCGTCGCCAAAAAATTTAG
GCTTCATTATTATTTCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCAAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTT
TTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACTAAGGCATATAGAGGGTTGCATGGAAAGGATATTACACAG
CGCAATAGGCCGGAGAGATATGACAGGAATCTCACCGAAGAGACATTGAAGGCTATTAAGAAGATTGATAAAGTCAGAGTGGTTAGGGAGTCAAGGCACATTGCACGGAG
GTTT
Protein sequenceShow/hide protein sequence
YELGWFEPSPVHYPLPLFPAFTPVTAARTISLNEWPRLAHRRSSVAPAAASCKFPSSIDLSQPFLAPPSDVSRLSSSHRRAVNSLRFCVFLCQISVDVGVVLDWVWPFGY
EGNLWYSVYQILPFDHNKCSSPSSQSAKIIIVAKKFRLHYYFKKRMRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQ
RNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRF