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Lsi03G019980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G019980
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
Genome locationchr03:31356732..31357250
RNA-Seq ExpressionLsi03G019980
SyntenyLsi03G019980
Gene Ontology termsGO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR003173 - Transcriptional coactivator p15 (PC4), C-terminal
IPR009044 - ssDNA-binding transcriptional regulator
IPR045125 - RNA polymerase II transcriptional coactivator Sub1/Tcp4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027581.1 RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma]6.4e-1150Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW
        T   NSDETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG        S S  QW
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW

KAG7033606.1 RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma]2.8e-1453.33Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRS
        T   +SDETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG+SHH +LFS   S
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRS

XP_022149410.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Momordica charantia]8.4e-1148.91Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW
        T+  +SDETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG        S S  QW
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW

XP_022149411.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Momordica charantia]1.4e-1053.16Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTS
        T+  +SDETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG S
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTS

XP_022966500.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita maxima]1.4e-1048.91Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW
        T   +S+ETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG       FS S  QW
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW

TrEMBL top hitse value%identityAlignment
A0A0A0L2F1 PC4 domain-containing protein2.6e-1046.88Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQWMNLL
        T   +SD+TDEIVV E                         +SKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG        S S  QW  LL
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQWMNLL

A0A6J1D5M3 RNA polymerase II transcriptional coactivator KIWI-like isoform X14.0e-1148.91Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW
        T+  +SDETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG        S S  QW
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW

A0A6J1D8A4 RNA polymerase II transcriptional coactivator KIWI-like isoform X26.9e-1153.16Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTS
        T+  +SDETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG S
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTS

A0A6J1EYI2 RNA polymerase II transcriptional coactivator KIWI-like isoform X19.0e-1148.91Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW
        T   +SDETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG        S S  QW
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW

A0A6J1HRT2 RNA polymerase II transcriptional coactivator KIWI-like isoform X16.9e-1148.91Show/hide
Query:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW
        T   +S+ETDEIVV E                         ISKNRRVMV+NWQGK V+DIREFYVKDG  MP KKG       FS S  QW
Subjt:  TTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQW

SwissProt top hitse value%identityAlignment
O65154 RNA polymerase II transcriptional coactivator KIWI6.2e-0957.41Show/hide
Query:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQWMNL
        ISKNRRV V+NW GK  +DIREFYVKDG  +P KKG        S S  QW  L
Subjt:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQWMNL

Arabidopsis top hitse value%identityAlignment
AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP)1.6e-0444.74Show/hide
Query:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTS
        +S  RRV ++ ++GK ++ IRE+Y KDG  +P  KG S
Subjt:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTS

AT4G10920.2 transcriptional coactivator p15 (PC4) family protein (KELP)1.6e-0444.74Show/hide
Query:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTS
        +S  RRV ++ ++GK ++ IRE+Y KDG  +P  KG S
Subjt:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTS

AT5G09240.1 ssDNA-binding transcriptional regulator9.5e-0533.7Show/hide
Query:  SDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMP--AKKGTSHHPILFSFSRSQWMNL
        SD+ DE   +       PP   A     I    +  + KNRRV V+N  G+  + IR+F+VKDG+ +P  +K+G        S S  QW +L
Subjt:  SDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMP--AKKGTSHHPILFSFSRSQWMNL

AT5G09250.1 ssDNA-binding transcriptional regulator4.4e-1057.41Show/hide
Query:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQWMNL
        ISKNRRV V+NW GK  +DIREFYVKDG  +P KKG        S S  QW  L
Subjt:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQWMNL

AT5G09250.2 ssDNA-binding transcriptional regulator1.7e-0972.22Show/hide
Query:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKG
        ISKNRRV V+NW GK  +DIREFYVKDG  +P KKG
Subjt:  ISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCTCCTTACAACACATTCAAATTCTGACGAAACCGATGAAATAGTCGTCTATGAGGTCTTTCACTTCCTTCCTCCTCCTGTTTTTAGCGCCTTTACCTTGCTTTC
AATTCTTCAATGCTGCCTTTTTACTATTTCAAAGAACCGTAGGGTTATGGTCAAGAATTGGCAAGGAAAGTTTGTCATGGATATTCGCGAGTTTTATGTCAAAGATGGCT
TGCACATGCCTGCAAAGAAAGGTACATCTCATCATCCTATTCTTTTCTCTTTCTCTCGCTCCCAGTGGATGAATTTACTTTTCGTTTTCGATTTACAAGTTTGC
mRNA sequenceShow/hide mRNA sequence
GGTTTTAAACTTCATTTTTAACCTTTCCATTTCTTTTTGGTCAGATCAGACCCTCTCTTTCGAATCCCACCTTTCATCGAGTATGGCCCTAAATTTTGGTTATTTTTGTT
TTCATATTTCTCTCCCACTCTTTGTCGTCTGCAAGAGGAAAGCGAAAGGACGAGGAAGATCACGCATCCGAGGGAGATGCTCCTCCTTACAACACATTCAAATTCTGACG
AAACCGATGAAATAGTCGTCTATGAGGTCTTTCACTTCCTTCCTCCTCCTGTTTTTAGCGCCTTTACCTTGCTTTCAATTCTTCAATGCTGCCTTTTTACTATTTCAAAG
AACCGTAGGGTTATGGTCAAGAATTGGCAAGGAAAGTTTGTCATGGATATTCGCGAGTTTTATGTCAAAGATGGCTTGCACATGCCTGCAAAGAAAGGTACATCTCATCA
TCCTATTCTTTTCTCTTTCTCTCGCTCCCAGTGGATGAATTTACTTTTCGTTTTCGATTTACAAGTTTGC
Protein sequenceShow/hide protein sequence
MLLLTTHSNSDETDEIVVYEVFHFLPPPVFSAFTLLSILQCCLFTISKNRRVMVKNWQGKFVMDIREFYVKDGLHMPAKKGTSHHPILFSFSRSQWMNLLFVFDLQVC