; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G020090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G020090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description(thale cress) hypothetical protein
Genome locationchr03:31517016..31519847
RNA-Seq ExpressionLsi03G020090
SyntenyLsi03G020090
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD5322558.1 unnamed protein product [Arabidopsis thaliana]8.1e-2655.24Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMT
        MEKYFGNAYRGDPGVPHAD DRFVNIWIGSAAFSVLTW NPYMWQLSNQFKY  LS S +  NS        L   + V+++     S        V MT
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMT

Query:  KRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT
           CLS+TTGK+  +R +  NSSGI  +   +G   I TG  T
Subjt:  KRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT

KAA0043996.1 hypothetical protein E6C27_scaffold236G003420 [Cucumis melo var. makuwa]8.7e-2871.28Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY----SFLSFSGKC----------LNSCSALQFAFLLHYSVVI
        MEKYFGNAYRGDPGVPH DP RF NIWIG+A FSVLTWFNPYMWQLSNQFKY     FLSF  KC          LN+CS+LQF+FLLHY VV+
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY----SFLSFSGKC----------LNSCSALQFAFLLHYSVVI

MBA0588026.1 hypothetical protein [Gossypium raimondii]4.5e-2449.34Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYS------VVIVLMFNFCS---NSF
        MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++    N      F F+L  +       +++   + CS    + 
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYS------VVIVLMFNFCS---NSF

Query:  TFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT
         F        +        KR  K  S    SG+STWT  TG  II TGL T
Subjt:  TFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT

MBA0830302.1 hypothetical protein [Gossypium armourianum]4.5e-2448.7Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCL---------NSCSALQFAFLLHYSVVIVLMFN--FCSN
        MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++              +CS + F +LL +S+ I    +      
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCL---------NSCSALQFAFLLHYSVVIVLMFN--FCSN

Query:  SFTFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT
         + +       + +       KR  K  S    SG+STWT  TG  II TGL T
Subjt:  SFTFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT

MBA0857769.1 hypothetical protein [Gossypium schwendimanii]3.4e-2450Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCL---------NSCSALQFAFLLHYSVVIVLMFNFCSNSF
        MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++              +CS + F +LL +S+ I    ++   + 
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCL---------NSCSALQFAFLLHYSVVIVLMFNFCSNSF

Query:  TFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT
         F        +        KR  K  S    SG+STWT  TG  II TGL T
Subjt:  TFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT

TrEMBL top hitse value%identityAlignment
A0A5D3DNH7 Uncharacterized protein4.2e-2871.28Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY----SFLSFSGKC----------LNSCSALQFAFLLHYSVVI
        MEKYFGNAYRGDPGVPH DP RF NIWIG+A FSVLTWFNPYMWQLSNQFKY     FLSF  KC          LN+CS+LQF+FLLHY VV+
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY----SFLSFSGKC----------LNSCSALQFAFLLHYSVVI

A0A7G2EL77 (thale cress) hypothetical protein3.9e-2655.24Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMT
        MEKYFGNAYRGDPGVPHAD DRFVNIWIGSAAFSVLTW NPYMWQLSNQFKY  LS S +  NS        L   + V+++     S        V MT
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMT

Query:  KRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT
           CLS+TTGK+  +R +  NSSGI  +   +G   I TG  T
Subjt:  KRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT

A0A7J8PFY2 Uncharacterized protein2.2e-2449.34Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYS------VVIVLMFNFCS---NSF
        MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++    N      F F+L  +       +++   + CS    + 
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYS------VVIVLMFNFCS---NSF

Query:  TFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT
         F        +        KR  K  S    SG+STWT  TG  II TGL T
Subjt:  TFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT

A0A7J9J7C6 Uncharacterized protein2.2e-2448.7Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCL---------NSCSALQFAFLLHYSVVIVLMFN--FCSN
        MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++              +CS + F +LL +S+ I    +      
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCL---------NSCSALQFAFLLHYSVVIVLMFN--FCSN

Query:  SFTFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT
         + +       + +       KR  K  S    SG+STWT  TG  II TGL T
Subjt:  SFTFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT

A0A7J9LHD3 Uncharacterized protein1.7e-2450Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCL---------NSCSALQFAFLLHYSVVIVLMFNFCSNSF
        MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++              +CS + F +LL +S+ I    ++   + 
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCL---------NSCSALQFAFLLHYSVVIVLMFNFCSNSF

Query:  TFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT
         F        +        KR  K  S    SG+STWT  TG  II TGL T
Subjt:  TFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09860.1 unknown protein5.6e-2594.23Show/hide
Query:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY
        MEKYFGNAYRGDPGVPHAD DRFVNIWIGSAAFSVLTW NPYMWQLSNQF Y
Subjt:  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCATTCCATTGCTGTAGATAAGCAGATAGAACGACAAACCAGAAAGAAGCAGTGCTTTCTGAGAAGCCAAAGCGAGAGGGACGAAGAAATGGAGAAGTACTTCGG
AAATGCTTACAGAGGCGACCCTGGAGTTCCACACGCCGACCCAGATCGTTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGTTCTCACATGGTTCAATCCTTACA
TGTGGCAACTCTCCAATCAGTTCAAGTACTCGTTTCTTTCTTTCTCAGGGAAATGTTTGAATTCGTGTTCTGCTCTGCAATTCGCCTTCCTGCTTCATTACTCTGTTGTT
ATAGTACTGATGTTCAATTTCTGTAGCAATAGCTTCACATTCTTTTTGGTGGTTGGCATGACAAAGCGTTTTTGTTTGAGCAATACCACTGGAAAAAGGCACGTCAAAAG
AATCAGCCATACCAATTCAAGTGGAATCAGTACATGGACAAGTACCACCGGGATTCCTATTATTATAACTGGCCTGTGTACTTTCCTTAGGCTCTCTGATTATGTAAGAA
AACCGTTGCTTGACTGCTTAGTTATTTGGCTTGTTTCGGTGGCAAACAGAGATTACTATTACACTAAGGCTCGAAGGTCTATGGATGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCATTCCATTGCTGTAGATAAGCAGATAGAACGACAAACCAGAAAGAAGCAGTGCTTTCTGAGAAGCCAAAGCGAGAGGGACGAAGAAATGGAGAAGTACTTCGG
AAATGCTTACAGAGGCGACCCTGGAGTTCCACACGCCGACCCAGATCGTTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGTTCTCACATGGTTCAATCCTTACA
TGTGGCAACTCTCCAATCAGTTCAAGTACTCGTTTCTTTCTTTCTCAGGGAAATGTTTGAATTCGTGTTCTGCTCTGCAATTCGCCTTCCTGCTTCATTACTCTGTTGTT
ATAGTACTGATGTTCAATTTCTGTAGCAATAGCTTCACATTCTTTTTGGTGGTTGGCATGACAAAGCGTTTTTGTTTGAGCAATACCACTGGAAAAAGGCACGTCAAAAG
AATCAGCCATACCAATTCAAGTGGAATCAGTACATGGACAAGTACCACCGGGATTCCTATTATTATAACTGGCCTGTGTACTTTCCTTAGGCTCTCTGATTATGTAAGAA
AACCGTTGCTTGACTGCTTAGTTATTTGGCTTGTTTCGGTGGCAAACAGAGATTACTATTACACTAAGGCTCGAAGGTCTATGGATGTGTAGAATCATATTTCTTTTGAC
CAGTTTGGATAACGGTTTTGTCGTGTGGTCGCCCTATACTGTAGTAATGATATTGAGAATGGATGAATTGTACCAGGTACCATTTGCAATTATATGATAAAGATCTGAAA
GGGCATTTTATATCATACTGATATGGAACATAGAAACTGAAACAAGTGCTAAAACTGGGTGGTCAGATGCTCAAATGAGATTTTAACTTCCTCTCTCATAATCAATAGAT
AATATAACATACCCTTTGGCTTTGATCTATGAACATTTTCATAATTTTTTTCTTTTAACAATACATGGGGTGGGGGAATTAAACCTCTAACCTTGAGGTTGAAAGCACAT
GCCTTATGCCCGTTGAGCTATGTTCTTTTTGGCACATTTTCATCATTTTGCTGGGGTATTGTATAGAGCTTAGATCTTGATTTCTTCTTGCTTATCTTTTACGATATACC
TCTTTACATATAATTCCTGGATCGTTCGAAAATTCTTAGATCTGATAGAAACGATCAAATTATTATCATTCTCAGTCTCTTACAGGTGGGGTGTTCTGATTCTAAGATGA
AGCAGAAACCCAATTTTCTCATTTATGGATATGGGTTTCTTAGCACAGCTTCACCATTGCTGTACTGTATTAGTCAAGGCCCAAAGTGGAATACTATGGGCCTTAAAGCT
CTATCTGTTGCCATGTTTTGAAGAACTGTAACCCCATTTTGAAAAGCACCCACAATTCAGCTTTACAATCACTATGCATAAAGGAAAAAGGGTCATAATGTCCAAAGTAA
AGCATCTTCATTCCCACCCAAGGAAAAGCTGTTGAATCAAAAGATGAGAAAGAAGAAAAAAAGAAAAAGAAAAAAGTAAGAAAACAGTGCAGAGGAGGATTTCAACCAAG
TTTTAGAGAAGACCCTTTTCTTTTCTTCCTTCCATTAGCTTATCTAATTGTGAAAGTCAAGAATCAAAATGATTATGGTTATCAACTTCATTCTTCATCATGATGATTTT
CTCTTAAGACATTGTTCATTCTTCTATACATTAAAATGGGTGAATTTCCCTTTATGCCATCGTACATGCAAAATAACCTTCTAAATGGTAGTGAAACATAGCTTTCAAGG
TCAAATATGATTGATCTTTTATGATTTAGGCTTGGGTTTATTCTAGTCTATACGGTTTTAAAAGTTTTGATATGTTCTTGTAATTTGGTTAACTGTTATAATCCATCCCA
AACCATCTCTTTTTCCATTTGT
Protein sequenceShow/hide protein sequence
MAHSIAVDKQIERQTRKKQCFLRSQSERDEEMEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYSVV
IVLMFNFCSNSFTFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCTFLRLSDYVRKPLLDCLVIWLVSVANRDYYYTKARRSMDV