CuGenDBv2

Gene ID	Lsi03G020100
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription initiation factor TFIID subunit 8
Genome location	chr03:31520671..31521478
RNA-Seq Expression	Lsi03G020100
Synteny	Lsi03G020100
Gene Ontology terms	GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR006565 - Bromodomain associated domain IPR009072 - Histone-fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596483.1 Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-07

63.64

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD
        SAGFQ FKE AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD

KAG7028031.1 Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-07

63.64

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD
        SAGFQ FKE AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD

XP_022953103.1 transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita moschata]

1.4e-07

63.64

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD
        SAGFQ FKE AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD

XP_022953779.1 transcription initiation factor TFIID subunit 8-like isoform X2 [Cucurbita moschata]

1.4e-07

63.64

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD
        SAGFQ FKE AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD

XP_022954508.1 transcription initiation factor TFIID subunit 8-like isoform X3 [Cucurbita moschata]

1.4e-07

63.64

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD
        SAGFQ FKE AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GMG0 Transcription initiation factor TFIID subunit 8

6.5e-08

63.64

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD
        SAGFQ FKE AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD

A0A6J1GQQ1 Transcription initiation factor TFIID subunit 8

6.5e-08

63.64

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD
        SAGFQ FKE AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD

A0A6J1GRA3 Transcription initiation factor TFIID subunit 8

6.5e-08

63.64

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD
        SAGFQ FKE AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFD

A0A6J1KVR9 Transcription initiation factor TFIID subunit 8

2.5e-07

57.14

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAIEAIKD
        SAGFQ FK  AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD  I A+++
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAIEAIKD

A0A6J1KY58 Transcription initiation factor TFIID subunit 8

2.5e-07

57.14

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAIEAIKD
        SAGFQ FK  AL+A+ DIAIKYLRHLGKIA FYANL G  +         C VFD  I A+++
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAIEAIKD

SwissProt top hits

e value

%identity

Alignment

Q9SYZ9 Transcription initiation factor TFIID subunit 8

2.5e-04

39.66

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAI
        S G+++FK+ AL +++  A++Y+  LGK A  +ANLTG SQ         C VFD  +
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAI

Arabidopsis top hits

e value

%identity

Alignment

AT3G02160.1 Bromodomain transcription factor

2.5e-04

48.57

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Query:  FQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTG
        F SF+E AL+ + D+A++Y++ +GK A  YANL G
Subjt:  FQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTG

AT4G34340.1 TBP-associated factor 8

1.8e-05

39.66

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Query:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAI
        S G+++FK+ AL +++  A++Y+  LGK A  +ANLTG SQ         C VFD  +
Subjt:  SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAI

Sequences

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CDS sequence

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AGCGCAGGGTTTCAGAGCTTTAAGGAGTTTGCTCTGAACGCAGTGGCCGACATTGCCATCAAATACCTTCGTCATTTAGGAAAGATTGCAGGATTTTATGCCAATCTAAC
TGGAGGAAGCCAAGAGAGCCGCGTGCCGAGAGATAGAGTTTGCAAGGTGTTTGATTTTGCCATTGAGGCGATTAAAGATGGTGGCTTTCCTAATATTCAAGATGAGAAGG
CAAAAGATTTTTCCTCATGGCGAGGCCTCTTGATCATTTCAAGTTCGAAACTTGCAAAACATTTCTTGGAGGATCTA

mRNA sequence

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Protein sequence

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SAGFQSFKEFALNAVADIAIKYLRHLGKIAGFYANLTGGSQESRVPRDRVCKVFDFAIEAIKDGGFPNIQDEKAKDFSSWRGLLIISSSKLAKHFLEDL

Lsi03G020100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome