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Lsi03G020960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G020960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRRM domain-containing protein
Genome locationchr03:32236414..32237402
RNA-Seq ExpressionLsi03G020960
SyntenyLsi03G020960
Gene Ontology termsGO:0080156 - mitochondrial mRNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018831311.1 organelle RRM domain-containing protein 2, mitochondrial-like [Juglans regia]2.0e-0869.77Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        ++ AR+VTDRN G+SKGFGFV YAT+E+AEKG+KGMDAQ ++G
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

XP_030927598.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X2 [Quercus lobata]4.0e-0975Show/hide
Query:  LLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        L +SAR+VTDR  G+SKGFGFV YATLE+AEKGMKGMDAQ ++G
Subjt:  LLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

XP_041026018.1 organelle RRM domain-containing protein 2, mitochondrial-like [Juglans microcarpa x Juglans regia]8.8e-0972.09Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        ++ AR+VTDRN G+SKGFGFV YATLE+AEKG+KGMDAQ ++G
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

XP_042940066.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X1 [Carya illinoinensis]8.8e-0972.09Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        ++ AR+VTDRN G+SKGFGFV YATLE+AEKG+KGMDAQ ++G
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

XP_042940067.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X2 [Carya illinoinensis]1.4e-0975Show/hide
Query:  LLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        L +SAR+VTDRN G+SKGFGFV YATLE+AEKG+KGMDAQ ++G
Subjt:  LLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

TrEMBL top hitse value%identityAlignment
A0A164VCD1 RRM domain-containing protein2.8e-0869.77Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        ++ AR+VTDRN GFSKGFGFVRYA +EEAE G+KGMD Q ++G
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

A0A2I4FI37 organelle RRM domain-containing protein 2, mitochondrial-like9.5e-0969.77Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        ++ AR+VTDRN G+SKGFGFV YAT+E+AEKG+KGMDAQ ++G
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

A0A2N9J2W2 RRM domain-containing protein2.1e-0868.18Show/hide
Query:  LLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        + ++AR+VTD   G+SKGFGFVRY+TLE+AEKGMKGMDAQ ++G
Subjt:  LLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

A0A7N2M600 RRM domain-containing protein1.2e-0872.09Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        ++ AR+VTDR  G+SKGFGFV YATLE+AEKGMKGMDAQ ++G
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

A0A7N2M6U1 RRM domain-containing protein1.2e-0872.09Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        ++ AR+VTDR  G+SKGFGFV YATLE+AEKGMKGMDAQ ++G
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

SwissProt top hitse value%identityAlignment
P15771 Nucleolin6.2e-0547.92Show/hide
Query:  ISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQD
        ISARIVTDR+ G SKGFGFV +++ E+A+   + M+   ++G +V+ D
Subjt:  ISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQD

P20397 Nucleolin3.6e-0545.83Show/hide
Query:  ISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQD
        ++ARIVTDR+ G SKGFGFV ++T E+A+   + M+   ++G +V+ D
Subjt:  ISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQD

Q04836 31 kDa ribonucleoprotein, chloroplastic5.2e-0436Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQDI
        ++ AR+V DR  G S+GFGFV  + ++E  + +  +D QN+EG+ +  ++
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQDI

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial7.8e-0862.5Show/hide
Query:  ARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        A++VTDR  G+SKGFGFVRYATLE++ KG+ GMD + ++G
Subjt:  ARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG

Q9ZUU4 RNA-binding protein CP29B, chloroplastic2.3e-0436.96Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEV
        ++ AR++ DR+ G SKGFGFV Y + +E +  +K +D  +++G+++
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEV

Arabidopsis top hitse value%identityAlignment
AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-0536.96Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEV
        ++ AR++ DR+ G SKGFGFV Y + +E +  +K +D  +++G+++
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEV

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-0750Show/hide
Query:  FFLLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQD
        F  L+ AR++TDR+ G SKGFGFV YAT+E+AEK    M+A+ ++G  +  D
Subjt:  FFLLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQD

AT4G13860.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-0537.93Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQDIHLTNLIDD
        ++ A ++ DR    S+GFGFV Y++  EAE  + GMD + + G+ VS  +     IDD
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQDIHLTNLIDD

AT4G24770.1 31-kDa RNA binding protein3.7e-0536Show/hide
Query:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQDI
        ++ AR+V DR  G S+GFGFV  + ++E  + +  +D QN+EG+ +  ++
Subjt:  LISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQDI

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-0962.5Show/hide
Query:  ARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG
        A++VTDR  G+SKGFGFVRYATLE++ KG+ GMD + ++G
Subjt:  ARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCTTTAATCACCCATTTTGCATTGCTTTATTAATTTATAGCTTGCTGCTTTACATTACCTTGGCTTTCACATTGATTATGGTTTTTTTTTTTTTGCTTATTTC
AGCCAGAATTGTGACGGATCGTAATTGTGGATTCTCAAAGGGCTTTGGTTTTGTGAGATATGCTACTTTAGAAGAAGCAGAGAAAGGAATGAAAGGGATGGATGCTCAGA
ATATGGAAGGCCAAGAAGTCTCCCAGGACATTCATCTTACCAACCTGATAGATGATGCTTGTAAGGAGATTCAACTCATCCAATTTGGTTGGTTCACATTTTGGATATTT
TCTTCACTGTCCCATGTAATCCCAATGTATTTGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCTTTAATCACCCATTTTGCATTGCTTTATTAATTTATAGCTTGCTGCTTTACATTACCTTGGCTTTCACATTGATTATGGTTTTTTTTTTTTTGCTTATTTC
AGCCAGAATTGTGACGGATCGTAATTGTGGATTCTCAAAGGGCTTTGGTTTTGTGAGATATGCTACTTTAGAAGAAGCAGAGAAAGGAATGAAAGGGATGGATGCTCAGA
ATATGGAAGGCCAAGAAGTCTCCCAGGACATTCATCTTACCAACCTGATAGATGATGCTTGTAAGGAGATTCAACTCATCCAATTTGGTTGGTTCACATTTTGGATATTT
TCTTCACTGTCCCATGTAATCCCAATGTATTTGCAGTGATAATTGTTAATCCCAATGTATTTGCAGTGATAATTGGTAATCCCATGTAATCCCAATGTATTTGCAGTGAT
AATCCCAATGTATTTTCTTCACTGTCCCATTTTGGATCTA
Protein sequenceShow/hide protein sequence
MGFFNHPFCIALLIYSLLLYITLAFTLIMVFFFLLISARIVTDRNCGFSKGFGFVRYATLEEAEKGMKGMDAQNMEGQEVSQDIHLTNLIDDACKEIQLIQFGWFTFWIF
SSLSHVIPMYLQ