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Lsi03G021250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G021250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Genome locationchr03:32445930..32447628
RNA-Seq ExpressionLsi03G021250
SyntenyLsi03G021250
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137791.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus]1.7e-4485.95Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SVRANNSRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
        MASSS I  SSL PARA  CNHQD R CLFQIG SVRAN+SRAR  FR+Q AAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELI
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SVRANNSRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

XP_022145630.1 light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]1.3e-4988.24Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        MASSS + SSSLLPARAP  N QDGRLCLFQIGSVRANNSRAR PFRVQAAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K ILQVIGVDVGKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL

XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]4.8e-5290.76Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GSVRANN RARAPFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILN
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K ILQVIGVD+GKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL

XP_023526506.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo]2.4e-5189.92Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        MASS+TI SSSLLPA APIC+ QDGRLCLFQ+GSVRANN RARAPFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILN
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K ILQVIGVD+GKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL

XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]3.3e-5392.44Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        MASSS I SSSLLPARAPIC+ QDGRLCLFQIGSVRANNSR+R PFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIG FVVELILN
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K ILQVIGVDVGKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL

TrEMBL top hitse value%identityAlignment
A0A0A0LAI0 Uncharacterized protein8.0e-4585.95Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SVRANNSRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
        MASSS I  SSL PARA  CNHQD R CLFQIG SVRAN+SRAR  FR+Q AAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELI
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SVRANNSRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNK ILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

A0A5A7TRS8 High-light-induced protein5.2e-4488.43Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SVRANNSRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
        MASSS I  SSL PARA   N QDGR  LFQIG SVRANNSRAR  FRVQ AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SVRANNSRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELI

Query:  LNKSILQVIGVDVGKGLDLPL
        LNKSILQVIGVDVGKGLDLPL
Subjt:  LNKSILQVIGVDVGKGLDLPL

A0A6J1CV10 light-harvesting complex-like protein OHP1, chloroplastic6.4e-5088.24Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        MASSS + SSSLLPARAP  N QDGRLCLFQIGSVRANNSRAR PFRVQAAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K ILQVIGVDVGKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL

A0A6J1F851 light-harvesting complex-like protein OHP1, chloroplastic2.3e-5290.76Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GSVRANN RARAPFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILN
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K ILQVIGVD+GKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL

A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic2.3e-5290.76Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GSVRANN RARAPFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILN
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K ILQVIGVD+GKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL

SwissProt top hitse value%identityAlignment
O81208 Light-harvesting complex-like protein OHP1, chloroplastic7.3e-2757.14Show/hide
Query:  SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        SS+  SSSL    + +  H  GR   LC           +R + PF V+AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILN
Subjt:  SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K IL++IGV++GKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL

Arabidopsis top hitse value%identityAlignment
AT5G02120.1 one helix protein5.2e-2857.14Show/hide
Query:  SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN
        SS+  SSSL    + +  H  GR   LC           +R + PF V+AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILN
Subjt:  SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILN

Query:  KSILQVIGVDVGKGLDLPL
        K IL++IGV++GKGLDLPL
Subjt:  KSILQVIGVDVGKGLDLPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCTCTACGATTTTTTCATCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTAACCATCAAGATGGCCGACTCTGTCTCTTTCAAATTGGGTCTGTC
CGTGCCAATAACAGCAGGGCTCGTGCTCCTTTCAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTCGAAGCCCCGTTT
CTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGTATGATAGGCCTCATTGGAACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAG
GTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
CATATCAGAAATTTTCTTGCAAGAATTTTTATTCCGCATGGATATTTTTCTTAATAAAAAATTAAAAAGAGCGGACAATTTCTATCCCATACGACCACGATTTCC
CAACAGTCAATAATTAGTGAAGTCAGAAGTGAAAATAATTTCAACAAATCTGAAAATCCTCAAGATTAGGACCAAGACGCCAGCCTAGCATTTAATTTAAGGTAG
AAAAAGTAGTTCCGGAAAGAAAAATTGAAGAGGGAAAGTTCAGATAACATTACCGAAGCAGTGGTTGTGGTTGTGTTTGGGGCATTACCAAAGAATGGCGTCCTC
CTCTACGATTTTTTCATCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTAACCATCAAGATGGCCGACTCTGTCTCTTTCAAATTGGGTCTGTCCGTGCCAATAA
CAGCAGGGCTCGTGCTCCTTTCAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTCGAAGCCCCGTTTCTTGGATTCAC
TAAAACTGCTGAAATCTGGAATTCCAGAGCCTGTATGATAGGCCTCATTGGAACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAGGTGATTGGAGT
TGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGATTTCCAGAAAACTTTTAATCTTGAGATCCTTTGTGTTTTTTTATTGAAAAAAAGAAAATGAAATTGTAACT
GTAACACAGGACTTTCAACTGTACCAGAGAATTCTACAATCTTCAAGTTCTTGTACTTCATAAGTAATTACATAACATTGTCACCGTTGAGAATATGCTCACTCT
CTTGATTACTGTAAGAATACCTAGTAACCAGAACTCGAGAATATTGCAAATTAAATAAGCCTACAGATTCGAGTATCGATAACAGGCACCTTGGATGGAAGCTGA
CCTATGTCTAGTATTTCTTCCAGTGATATCCTGCGATTCTTCCAAGCAAGTTCTGCCCAGCTCCTCATCATCTGTCCTTCCGCCTTTCTACTATTTTGGACGTCA
AGTATCTCCGCATACGCACCTACAGAGGCAATCAGAGATATCAATGAATAATGATGCTCAGACCACCACGTTTATGAAAGTTTAACATGTCTCTTTTGCTATAAC
ATGCGACTTTATTAGAGATTTTAATCATAATCAGTGGTGGGATTTGATCATCTGGGTTTCATTTAAGAGTGCAACTGAAAGCTATCCAACGTTTAACTACTACAA
CTCTCGCAATGAACATTTCGATCTGATGCAGTGATTTGTTTGTTATTTTACAAGCCTCGAGCTAAACGCTTAGAATCACTTACCTCCAGCGATGATTGCTATGTC
ACGTCTGTCCACCTTGAATTGTTCTCCCGTGCCTTCAAGAGAATAAACTATTCAATTGAAATTTATTGATT
Protein sequenceShow/hide protein sequence
MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSVRANNSRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQ
VIGVDVGKGLDLPL