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Lsi03G021410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G021410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein, putative
Genome locationchr03:32576502..32580723
RNA-Seq ExpressionLsi03G021410
SyntenyLsi03G021410
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2013601.1 hypothetical protein ES319_D09G167000v1 [Gossypium barbadense]4.9e-0956.86Show/hide
Query:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        +L   QA A+AW FM+L+GL+CCCLST+P  H D+++ ++SC+CDGGY GV
Subjt:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

KAG5550296.1 hypothetical protein RHGRI_015303 [Rhododendron griersonianum]6.4e-0955.17Show/hide
Query:  IVNYDKGWLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        I+ Y   W+   QAL TAW FM L GL+CCCLS+ PR H D+ + S  CTCDG Y GV
Subjt:  IVNYDKGWLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

KAG6580518.1 hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sororia]6.0e-1572.22Show/hide
Query:  DKGWLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        +K +L   QAL TAWCFM+LLGLLCCCLST PRHH D+SA++SSCTCDGGYA +
Subjt:  DKGWLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

TYI65682.1 hypothetical protein E1A91_D09G172900v1 [Gossypium mustelinum]3.7e-0956.86Show/hide
Query:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        +L   QA A+AW FM+L+GL+CCCLST+P  H D+++ ++SC+CDGGY GV
Subjt:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

XP_038903553.1 uncharacterized protein LOC120090114 [Benincasa hispida]1.7e-1784.91Show/hide
Query:  DKGWLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAG
        DK +    QALATAWCFMMLLGLLCCCLSTNPRHH DSSAA+SSCTCDGGYAG
Subjt:  DKGWLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAG

TrEMBL top hitse value%identityAlignment
A0A2N9HV76 Uncharacterized protein2.4e-0960.78Show/hide
Query:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        +L   QALA+ W FM+L+GL+CCCLS  PR   D+S+ + SCTCDGGYAGV
Subjt:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

A0A5D2FAC1 Uncharacterized protein2.4e-0956.86Show/hide
Query:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        +L   QA A+AW FM+L+GL+CCCLST+P  H D+++ ++SC+CDGGY GV
Subjt:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

A0A5D2JJD2 Uncharacterized protein2.4e-0956.86Show/hide
Query:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        +L   QA A+AW FM+L+GL+CCCLST+P  H D+++ ++SC+CDGGY GV
Subjt:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

A0A5D2TKA7 Uncharacterized protein1.8e-0956.86Show/hide
Query:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        +L   QA A+AW FM+L+GL+CCCLST+P  H D+++ ++SC+CDGGY GV
Subjt:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

A0A5J5Q9G1 Uncharacterized protein2.4e-0956.86Show/hide
Query:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV
        +L   QA A+AW FM+L+GL+CCCLST+P  H D+++ ++SC+CDGGY GV
Subjt:  WLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTGGTGATCTGCAGTGAGCTAAGTGCTGTGATTAAGACTGCATTTCCTCCTTTGATCTCCCAGCGTGTTAAGAAAGGCCTTGCGATAGTGAACTATGACAAAGG
CTGGCTTGAGGGAGACCAGGCTTTGGCCACTGCTTGGTGTTTCATGATGCTGTTGGGCCTTTTGTGTTGTTGCCTCAGCACCAATCCCCGCCACCACCACGACTCCTCCG
CCGCTAGTTCCAGCTGCACTTGCGACGGCGGTTATGCAGGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTGGTGATCTGCAGTGAGCTAAGTGCTGTGATTAAGACTGCATTTCCTCCTTTGATCTCCCAGCGTGTTAAGAAAGGCCTTGCGATAGTGAACTATGACAAAGG
CTGGCTTGAGGGAGACCAGGCTTTGGCCACTGCTTGGTGTTTCATGATGCTGTTGGGCCTTTTGTGTTGTTGCCTCAGCACCAATCCCCGCCACCACCACGACTCCTCCG
CCGCTAGTTCCAGCTGCACTTGCGACGGCGGTTATGCAGGTGTTTGA
Protein sequenceShow/hide protein sequence
MKLVICSELSAVIKTAFPPLISQRVKKGLAIVNYDKGWLEGDQALATAWCFMMLLGLLCCCLSTNPRHHHDSSAASSSCTCDGGYAGV