; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G021640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G021640
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA double-strand break repair rad50 ATPase, putative isoform 1
Genome locationchr03:32768557..32768802
RNA-Seq ExpressionLsi03G021640
SyntenyLsi03G021640
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580503.1 hypothetical protein SDJN03_20505, partial [Cucurbita argyrosperma subsp. sororia]6.2e-2786.42Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
        MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVM AYN+SGRSSTPSISAAP+KV AVGQS PSESP G  +N +
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
KAG7017253.1 hypothetical protein SDJN02_19116, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-2786.42Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
        MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVM AYN+SGRSSTPSISAAP+KV AVGQS PSESP G  +N +
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
XP_022934274.1 uncharacterized protein LOC111441486 [Cucurbita moschata]6.2e-2786.42Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
        MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVM AYN+SGRSSTPSISAAP+KV AVGQS PSESP G  +N +
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
XP_022983476.1 uncharacterized protein LOC111482066 [Cucurbita maxima]1.8e-2685.19Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
        MLDEYISLKEQKVILDQERSYLEQEKIRVH LLQGMQTV+ AYN+SGRSSTPSISAAP+KVAAVGQS PSESP G  +N +
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
XP_023527203.1 uncharacterized protein LOC111790516 [Cucurbita pepo subsp. pepo]6.2e-2786.42Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
        MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVM AYN+SGRSSTPSISAAP+KV AVGQS PSESP G  +N +
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
TrEMBL top hitse value%identityAlignment
A0A5A7TMN6 DNA double-strand break repair rad50 ATPase, putative isoform 12.2e-2588.61Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLN
        MLDEYISLKEQKVILDQERSYLEQEKIRVH LLQGMQTVMSAYNSSGRSSTPSISAAPDKV  VGQ   SESPVG  +N
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLN
A0A6J1F245 uncharacterized protein LOC1114414863.0e-2786.42Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
        MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVM AYN+SGRSSTPSISAAP+KV AVGQS PSESP G  +N +
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
A0A6J1FTC3 uncharacterized protein LOC1114485851.3e-2586.08Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLN
        MLDEYI LKEQ+VILDQER YLEQEKIRVHTLLQGMQTVMSAYN SGRSS PSISAAPDKVA V QSGPSESP G  +N
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLN
A0A6J1I1N0 uncharacterized protein LOC1114700824.4e-2687.34Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLN
        MLDEYI LKEQ+VILDQER YLEQEKIRVHTLLQGMQTVMSAYN SGRSS PSISAAPDKVAAV QSGPSESP G  +N
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLN
A0A6J1J2B7 uncharacterized protein LOC1114820668.8e-2785.19Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
        MLDEYISLKEQKVILDQERSYLEQEKIRVH LLQGMQTV+ AYN+SGRSSTPSISAAP+KVAAVGQS PSESP G  +N +
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G37960.1 unknown protein5.7e-1054.84Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPS----ISAAP
        +L+EYI LK++K+++DQE+S L+QEK RV  LL GMQ VM+AYNSS  ++ P      SAAP
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPS----ISAAP
AT2G37960.2 unknown protein5.7e-1054.84Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPS----ISAAP
        +L+EYI LK++K+++DQE+S L+QEK RV  LL GMQ VM+AYNSS  ++ P      SAAP
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPS----ISAAP
AT3G54060.1 unknown protein1.3e-0946.34Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTP-SISAAPDKVAAVGQSGPSESPVGNVLNFS
        ML+ Y+SLK+QKV LDQE+  L+QEKIRV  LLQGM+ VM+ YN+S  +  P S   +  K  ++  SG S+    N ++ S
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTP-SISAAPDKVAAVGQSGPSESPVGNVLNFS
AT3G54060.2 unknown protein1.3e-0946.34Show/hide
Query:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTP-SISAAPDKVAAVGQSGPSESPVGNVLNFS
        ML+ Y+SLK+QKV LDQE+  L+QEKIRV  LLQGM+ VM+ YN+S  +  P S   +  K  ++  SG S+    N ++ S
Subjt:  MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTP-SISAAPDKVAAVGQSGPSESPVGNVLNFS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGATGAGTACATCAGTTTGAAAGAACAAAAGGTGATTCTGGATCAAGAAAGAAGCTATTTGGAGCAAGAGAAGATTCGCGTACACACTCTTCTACAGGGTATGCA
GACTGTCATGAGTGCTTATAATTCCAGTGGAAGGTCTTCAACGCCTTCGATTTCAGCTGCTCCAGATAAAGTTGCAGCTGTTGGTCAATCTGGTCCATCTGAATCTCCCG
TAGGTAACGTCCTAAATTTTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGATGAGTACATCAGTTTGAAAGAACAAAAGGTGATTCTGGATCAAGAAAGAAGCTATTTGGAGCAAGAGAAGATTCGCGTACACACTCTTCTACAGGGTATGCA
GACTGTCATGAGTGCTTATAATTCCAGTGGAAGGTCTTCAACGCCTTCGATTTCAGCTGCTCCAGATAAAGTTGCAGCTGTTGGTCAATCTGGTCCATCTGAATCTCCCG
TAGGTAACGTCCTAAATTTTTCTTAG
Protein sequenceShow/hide protein sequence
MLDEYISLKEQKVILDQERSYLEQEKIRVHTLLQGMQTVMSAYNSSGRSSTPSISAAPDKVAAVGQSGPSESPVGNVLNFS