; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G021890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G021890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr03:32986798..32995621
RNA-Seq ExpressionLsi03G021890
SyntenyLsi03G021890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027900.1 hypothetical protein SDJN02_09079, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2238.74Show/hide
Query:  CFC-----PACSSSVFWLLKKFTNLNPVHWVERCWWQYSEVETRFSSGSCYLRYYSGDQKRSGCFLSKTRTALFSIVQFLDTGSILCAPIEFFNPMKDFK
        CFC       C SSV WLLKKFTNL PVHWVE C  QY +V+T  SSGS YL YYSGDQK                                        
Subjt:  CFC-----PACSSSVFWLLKKFTNLNPVHWVERCWWQYSEVETRFSSGSCYLRYYSGDQKRSGCFLSKTRTALFSIVQFLDTGSILCAPIEFFNPMKDFK

Query:  TIKSSWLRNSRSRLWNCCVKLFDCKIRKSGRCFLNQSILAFFAERLDGTTKESKVSL-SSSSLFSGEDGSGSPTKVGSIFTCVMHIMPSPHITKMMAASK
                                                    RL+GT KESKV L SSSSLFSGED SGS         CV HIMPSPH   MMAASK
Subjt:  TIKSSWLRNSRSRLWNCCVKLFDCKIRKSGRCFLNQSILAFFAERLDGTTKESKVSL-SSSSLFSGEDGSGSPTKVGSIFTCVMHIMPSPHITKMMAASK

Query:  MVGNMGDIAHLSDISPKRFFPQKVKFSSRRILIYSGCLLGLLNEVCQIFVKST
        MVGNM                              GCLLGLL+EV QI VKST
Subjt:  MVGNMGDIAHLSDISPKRFFPQKVKFSSRRILIYSGCLLGLLNEVCQIFVKST
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTGGTCTTACTGCTACCAGCATTGTCTTGCAATACTTCGGTTAAAAACTTAAAAGTCATCGGCCCGCCAAATTTTCACGTTTCTCCGACCTCGTCCATGTCTTC
CTTTTTTTACCTACTTTCTTCACTCAGTAATGGCGTCCGCTTCTACAGTTCCACTTCCAATTCCTCCTTCGTTTCTCAATCTTTCTCCTTGCAGCATCGTACTTCGCATT
TCCGAGGCGATGGCATAGCAGTCAGGGAAAGCGATTTAATCAATGGCGAGGCGTTCGGGCCAGAGCTAAGCAAATTATCTAAACATGATGCCTTCTGTCCTTTAAAGTAC
AATTTACGTTTTTCTTTTTTCTTCTACTATTTTCTTAATGATTTTTGCTTTTGCCCAGCTTGCAGCAGCTCCGTTTTCTGGCTTCTTAAAAAGTTCACCAATCTTAATCC
AGTCCACTGGGTAGAACGCTGCTGGTGGCAATACAGTGAGGTTGAAACCAGGTTTAGCTCTGGCTCCTGTTACCTTCGCTATTACTCTGGAGACCAGAAAAGAAGTGGAT
GCTTCTTATCAAAAACAAGAACAGCGTTATTCAGTATTGTCCAGTTCTTAGATACTGGATCAATACTTTGTGCGCCAATTGAGTTCTTCAACCCCATGAAAGACTTCAAA
ACAATAAAGTCTTCATGGCTGAGAAACTCCAGAAGTCGATTATGGAACTGCTGCGTCAAGTTGTTTGACTGCAAAATTCGAAAGTCGGGAAGGTGCTTCCTAAACCAATC
AATTCTTGCTTTTTTTGCTGAAAGATTGGATGGAACAACAAAGGAATCAAAAGTTTCTCTATCATCATCATCTCTTTTTTCTGGCGAGGACGGCAGTGGCTCTCCAACTA
AAGTTGGCTCAATTTTCACTTGTGTTATGCACATTATGCCATCTCCACATATAACGAAGATGATGGCAGCAAGCAAGATGGTAGGCAATATGGGTGATATAGCACACCTT
TCAGACATTTCTCCCAAGAGGTTCTTCCCACAAAAAGTGAAGTTTTCATCGAGAAGGATATTAATTTATTCAGGCTGCTTGCTTGGTCTGCTGAATGAGGTTTGTCAGAT
TTTCGTAAAGTCCACCTACTATGGTTCAGGGTTGAACCCGGTTGACCCGCTGCTAAAAGTTTCGGTAATTGCATTCCAAAAGGTGAAAAAAGGGAGAGGGAAAGTTAGCT
TCTGTTATTGTCCAAATTGCCCAAGTTTTGTGCAACTAAAAGCCAAGTGCGTATTAAATATTAAGCATACAACTTGCAGGTATTGCTTATCATCGTGGTTACATGATGAA
ATGTTTGGTGGCCGTGTATCTCAGAGGAATCACAATAAGATTTCCCTCTTAAATGAAATCATTGCATTAAATTTAAATTTCATCATAATTACCATAAAACTCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTGGTCTTACTGCTACCAGCATTGTCTTGCAATACTTCGGTTAAAAACTTAAAAGTCATCGGCCCGCCAAATTTTCACGTTTCTCCGACCTCGTCCATGTCTTC
CTTTTTTTACCTACTTTCTTCACTCAGTAATGGCGTCCGCTTCTACAGTTCCACTTCCAATTCCTCCTTCGTTTCTCAATCTTTCTCCTTGCAGCATCGTACTTCGCATT
TCCGAGGCGATGGCATAGCAGTCAGGGAAAGCGATTTAATCAATGGCGAGGCGTTCGGGCCAGAGCTAAGCAAATTATCTAAACATGATGCCTTCTGTCCTTTAAAGTAC
AATTTACGTTTTTCTTTTTTCTTCTACTATTTTCTTAATGATTTTTGCTTTTGCCCAGCTTGCAGCAGCTCCGTTTTCTGGCTTCTTAAAAAGTTCACCAATCTTAATCC
AGTCCACTGGGTAGAACGCTGCTGGTGGCAATACAGTGAGGTTGAAACCAGGTTTAGCTCTGGCTCCTGTTACCTTCGCTATTACTCTGGAGACCAGAAAAGAAGTGGAT
GCTTCTTATCAAAAACAAGAACAGCGTTATTCAGTATTGTCCAGTTCTTAGATACTGGATCAATACTTTGTGCGCCAATTGAGTTCTTCAACCCCATGAAAGACTTCAAA
ACAATAAAGTCTTCATGGCTGAGAAACTCCAGAAGTCGATTATGGAACTGCTGCGTCAAGTTGTTTGACTGCAAAATTCGAAAGTCGGGAAGGTGCTTCCTAAACCAATC
AATTCTTGCTTTTTTTGCTGAAAGATTGGATGGAACAACAAAGGAATCAAAAGTTTCTCTATCATCATCATCTCTTTTTTCTGGCGAGGACGGCAGTGGCTCTCCAACTA
AAGTTGGCTCAATTTTCACTTGTGTTATGCACATTATGCCATCTCCACATATAACGAAGATGATGGCAGCAAGCAAGATGGTAGGCAATATGGGTGATATAGCACACCTT
TCAGACATTTCTCCCAAGAGGTTCTTCCCACAAAAAGTGAAGTTTTCATCGAGAAGGATATTAATTTATTCAGGCTGCTTGCTTGGTCTGCTGAATGAGGTTTGTCAGAT
TTTCGTAAAGTCCACCTACTATGGTTCAGGGTTGAACCCGGTTGACCCGCTGCTAAAAGTTTCGGTAATTGCATTCCAAAAGGTGAAAAAAGGGAGAGGGAAAGTTAGCT
TCTGTTATTGTCCAAATTGCCCAAGTTTTGTGCAACTAAAAGCCAAGTGCGTATTAAATATTAAGCATACAACTTGCAGGTATTGCTTATCATCGTGGTTACATGATGAA
ATGTTTGGTGGCCGTGTATCTCAGAGGAATCACAATAAGATTTCCCTCTTAAATGAAATCATTGCATTAAATTTAAATTTCATCATAATTACCATAAAACTCAAGTAA
Protein sequenceShow/hide protein sequence
MGLVLLLPALSCNTSVKNLKVIGPPNFHVSPTSSMSSFFYLLSSLSNGVRFYSSTSNSSFVSQSFSLQHRTSHFRGDGIAVRESDLINGEAFGPELSKLSKHDAFCPLKY
NLRFSFFFYYFLNDFCFCPACSSSVFWLLKKFTNLNPVHWVERCWWQYSEVETRFSSGSCYLRYYSGDQKRSGCFLSKTRTALFSIVQFLDTGSILCAPIEFFNPMKDFK
TIKSSWLRNSRSRLWNCCVKLFDCKIRKSGRCFLNQSILAFFAERLDGTTKESKVSLSSSSLFSGEDGSGSPTKVGSIFTCVMHIMPSPHITKMMAASKMVGNMGDIAHL
SDISPKRFFPQKVKFSSRRILIYSGCLLGLLNEVCQIFVKSTYYGSGLNPVDPLLKVSVIAFQKVKKGRGKVSFCYCPNCPSFVQLKAKCVLNIKHTTCRYCLSSWLHDE
MFGGRVSQRNHNKISLLNEIIALNLNFIIITIKLK