CuGenDBv2

Gene ID	Lsi03G022710
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein
Genome location	chr03:33624037..33626548
RNA-Seq Expression	Lsi03G022710
Synteny	Lsi03G022710
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442331.1 PREDICTED: uncharacterized protein LOC103486235 isoform X1 [Cucumis melo]

4.7e-66

96.15

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Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLL+ LLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
        AEVPMIDVHLRYSGSDLHGVTAKV+DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

XP_008442332.1 PREDICTED: uncharacterized protein LOC103486235 isoform X2 [Cucumis melo]

4.7e-66

96.15

Show/hide

Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLL+ LLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
        AEVPMIDVHLRYSGSDLHGVTAKV+DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

XP_022157272.1 uncharacterized protein LOC111024020 isoform X2 [Momordica charantia]

4.0e-65

93.85

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Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEP ILSLLVLLL L+PIS+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

XP_038903796.1 uncharacterized protein LOC120090293 isoform X1 [Benincasa hispida]

1.5e-67

97.69

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Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPILSLLV LLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINR+S
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
        AEVPMIDVHLRYSGSDLHGVTAKV+DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

XP_038903797.1 uncharacterized protein LOC120090293 isoform X2 [Benincasa hispida]

1.5e-67

97.69

Show/hide

Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPILSLLV LLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINR+S
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
        AEVPMIDVHLRYSGSDLHGVTAKV+DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B5G0 uncharacterized protein LOC103486235 isoform X1

2.3e-66

96.15

Show/hide

Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLL+ LLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
        AEVPMIDVHLRYSGSDLHGVTAKV+DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

A0A1S3B641 uncharacterized protein LOC103486235 isoform X2

2.3e-66

96.15

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Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLL+ LLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
        AEVPMIDVHLRYSGSDLHGVTAKV+DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

A0A5A7TLX6 Uncharacterized protein

2.3e-66

96.15

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Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PPILSLL+ LLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
        AEVPMIDVHLRYSGSDLHGVTAKV+DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

A0A6J1DU34 uncharacterized protein LOC111024020 isoform X2

1.9e-65

93.85

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Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEP ILSLLVLLL L+PIS+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

A0A6J1DXJ6 uncharacterized protein LOC111024020 isoform X1

1.9e-65

93.85

Show/hide

Query:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEP ILSLLVLLL L+PIS+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPPILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHI
Subjt:  AEVPMIDVHLRYSGSDLHGVTAKVMDMPHI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G51610.1 unknown protein

2.4e-52

75.81

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Query:  ILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPM
        I +L+++ LS   +S AYRPGDIV MSKMGQYHSSRT WHD+IG+HCPIF VNREVL+PI KP+GYTG DPYKI FQVG EKFL+ WLLVINRKS+EVPM
Subjt:  ILSLLVLLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPM

Query:  IDVHLRYSGSDLHGVTAKVMDMPH
        IDV+LRYSG DL GVTA+V+DMPH
Subjt:  IDVHLRYSGSDLHGVTAKVMDMPH

Sequences

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CDS sequence

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ATTTGTGACCATTTCCCACTGAGGAAATTATTCAGCCTGATTGAATTGGGCCAAGTTCGAGATGGACCGAGAAGTAAAACCCAATTGGATCTGAAAGTAGCGGGGCCCAT
GGATAACTCTGGGCCCCGGGGGCCGAGCACCAAGGATCCCCGCCAGTCCAAAAGGGCGAGGAGGGAAACTGATTCCATAGAGCTCCAATTCTTGGAACGATTGGGCAAAT
TACCGTCGACGATGGGAGAACCTCCAATTCTATCTCTCCTCGTTTTGCTATTGTCGCTGGTTCCGATTTCGCTGGCTTACAGGCCCGGAGACATCGTTCCGATGAGCAAG
ATGGGACAGTATCACTCGTCGAGAACAGTTTGGCACGATATGATAGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTTTTGGTTCCTATACCGAAACCGGTCGG
CTACACAGGAGCTGATCCGTATAAAATATCCTTTCAAGTTGGAAAAGAGAAGTTTCTTGTCCCATGGCTTCTTGTGATAAATCGAAAAAGTGCAGAAGTCCCAATGATTG
ATGTCCATTTGAGATACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAATGGACATGCCTCATATCTGTATGTCCCAACTCTGTTAA

mRNA sequence

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Protein sequence

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ICDHFPLRKLFSLIELGQVRDGPRSKTQLDLKVAGPMDNSGPRGPSTKDPRQSKRARRETDSIELQFLERLGKLPSTMGEPPILSLLVLLLSLVPISLAYRPGDIVPMSK
MGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPMIDVHLRYSGSDLHGVTAKVMDMPHICMSQLC

Lsi03G022710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome