; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi03G022770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi03G022770
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L35
Genome locationchr03:33672078..33676617
RNA-Seq ExpressionLsi03G022770
SyntenyLsi03G022770
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044224.1 RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]1.0e-3970.21Show/hide
Query:  VDSVALQ-IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLL
        +DS A+  +AMA+GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQRRRTLKSRMLSFVK+HLGR  SK+P      
Subjt:  VDSVALQ-IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLL

Query:  AESENQSWHVGRLELRFVAAFGVGLAYLLALNTQIGLGNAI
        +ES+ Q WHVG          GVG  YL+AL TQIGL NA+
Subjt:  AESENQSWHVGRLELRFVAAFGVGLAYLLALNTQIGLGNAI

KAE8650972.1 hypothetical protein Csa_002588 [Cucumis sativus]1.4e-4973.89Show/hide
Query:  IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSW
        +AMA+GHRRSFKI+V AKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKS SRIL+QRRRTLKSRMLSFVK+HLG R SK P      AES  +SW
Subjt:  IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSW

Query:  HVGRLELRFVAAFGVGLAY-LLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKWK
        HVG LE R VAAFGVGL Y ++AL TQI L NAI P+F+S IWV L +FVLWL K K
Subjt:  HVGRLELRFVAAFGVGLAY-LLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKWK

TYK24910.1 50S ribosomal protein L35 [Cucumis melo var. makuwa]7.1e-3872.87Show/hide
Query:  GHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRL
        GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQRRRTLKSRMLSFVK+HLGR  SK+P      +ES+ QSWHVG  
Subjt:  GHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRL

Query:  ELRFVAAFGVGLAYLLALNTQIGLGNAIH
                GVG  YL+AL TQIGL NA +
Subjt:  ELRFVAAFGVGLAYLLALNTQIGLGNAIH

XP_008442323.1 PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo]8.4e-4770.13Show/hide
Query:  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHV
        MA+GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQRRRTLKSRMLSFVK+HLGR  SK+P      +ES+ QSWHV
Subjt:  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHV

Query:  GRLELRFVAAFGVGLAYLLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKWK
        G          GVG  YL+AL TQIGL NA+  +F+S IWV L +FV+WL K K
Subjt:  GRLELRFVAAFGVGLAYLLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKWK

XP_038906422.1 uncharacterized protein LOC120092221 [Benincasa hispida]2.6e-5677.25Show/hide
Query:  WTVDSVALQIAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYL
        W  D+    +AMALG RRSFKITVHAKICNLYIKLKATLK PS K Q LLKLDKLLIG DSKSES ILVQRRRTLKSRMLSFVK+HLG   SKMP     
Subjt:  WTVDSVALQIAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYL

Query:  LAESENQSWHVGRLELRFVAAFGVGLAYLLALNTQIGLGNAIHPTFTSFIWV--CLLLFVLWLHKWK
         AESENQSW VGR+ELR VA FGVGL YLLALNT IGL NAIHP+F+S IWV  CLLLFVLWLHK K
Subjt:  LAESENQSWHVGRLELRFVAAFGVGLAYLLALNTQIGLGNAIHPTFTSFIWV--CLLLFVLWLHKWK

TrEMBL top hitse value%identityAlignment
A0A0A0LCL9 50S ribosomal protein L353.8e-4575Show/hide
Query:  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHV
        MA+GHRRSFKI+V AKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKS SRIL+QRRRTLKSRMLSFVK+HLG R SK P      AES  +SWHV
Subjt:  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHV

Query:  GRLELRFVAAFGVGLAY-LLALNTQIGLGNAIHPTFTSFIWVCL
        G LE R VAAFGVGL Y ++AL TQI L NAI P+F+S IWV L
Subjt:  GRLELRFVAAFGVGLAY-LLALNTQIGLGNAIHPTFTSFIWVCL

A0A1S3B4Y8 uncharacterized protein LOC1034862294.1e-4770.13Show/hide
Query:  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHV
        MA+GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQRRRTLKSRMLSFVK+HLGR  SK+P      +ES+ QSWHV
Subjt:  MALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHV

Query:  GRLELRFVAAFGVGLAYLLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKWK
        G          GVG  YL+AL TQIGL NA+  +F+S IWV L +FV+WL K K
Subjt:  GRLELRFVAAFGVGLAYLLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKWK

A0A5A7TM08 RING-H2 finger protein ATL74-like4.8e-4070.21Show/hide
Query:  VDSVALQ-IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLL
        +DS A+  +AMA+GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQRRRTLKSRMLSFVK+HLGR  SK+P      
Subjt:  VDSVALQ-IAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLL

Query:  AESENQSWHVGRLELRFVAAFGVGLAYLLALNTQIGLGNAI
        +ES+ Q WHVG          GVG  YL+AL TQIGL NA+
Subjt:  AESENQSWHVGRLELRFVAAFGVGLAYLLALNTQIGLGNAI

A0A5D3DNQ2 50S ribosomal protein L353.5e-3872.87Show/hide
Query:  GHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRL
        GHRRSFKI+VHAKICNLYIKLKATLKLPS KFQ LLKLDKLLI VDSKSESR+LVQRRRTLKSRMLSFVK+HLGR  SK+P      +ES+ QSWHVG  
Subjt:  GHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSYLLAESENQSWHVGRL

Query:  ELRFVAAFGVGLAYLLALNTQIGLGNAIH
                GVG  YL+AL TQIGL NA +
Subjt:  ELRFVAAFGVGLAYLLALNTQIGLGNAIH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTTTCACTTGGTTTTCTCCAGTGGCAGTGGACGGTGGACAGTGTTGCGCTGCAAATTGCAATGGCGTTAGGTCATCGGCGGTCATTCAAAATAACTGTTCATGC
AAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCAGGAAATTTCAAGGCCTCCTAAAGCTTGATAAACTACTCATCGGAGTGGATTCCAAAT
CTGAATCTCGGATCCTCGTTCAACGCCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAGGCATTTGGGGCGTCGGGGATCTAAAATGCCCCAATACTCATAC
CTACTTGCTGAATCTGAAAATCAATCTTGGCATGTTGGCCGTCTGGAACTAAGGTTTGTGGCTGCTTTTGGTGTTGGATTGGCTTATCTTCTTGCACTCAACACACAGAT
TGGCCTTGGCAATGCCATCCATCCCACCTTCACTTCCTTTATTTGGGTTTGCTTGCTTTTATTTGTTTTATGGCTCCACAAATGGAAAGAAGATCGAAGAGACGGGGAAG
GTGATCGGACATCGGAGGTGTCGTCAAAGGGGAGGGGGGACCCACTTGCCATTCCCAATTTCCCTCTCGTGCCCGCATGCCAAACCGGCGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTTTCACTTGGTTTTCTCCAGTGGCAGTGGACGGTGGACAGTGTTGCGCTGCAAATTGCAATGGCGTTAGGTCATCGGCGGTCATTCAAAATAACTGTTCATGC
AAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCAGGAAATTTCAAGGCCTCCTAAAGCTTGATAAACTACTCATCGGAGTGGATTCCAAAT
CTGAATCTCGGATCCTCGTTCAACGCCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAGGCATTTGGGGCGTCGGGGATCTAAAATGCCCCAATACTCATAC
CTACTTGCTGAATCTGAAAATCAATCTTGGCATGTTGGCCGTCTGGAACTAAGGTTTGTGGCTGCTTTTGGTGTTGGATTGGCTTATCTTCTTGCACTCAACACACAGAT
TGGCCTTGGCAATGCCATCCATCCCACCTTCACTTCCTTTATTTGGGTTTGCTTGCTTTTATTTGTTTTATGGCTCCACAAATGGAAAGAAGATCGAAGAGACGGGGAAG
GTGATCGGACATCGGAGGTGTCGTCAAAGGGGAGGGGGGACCCACTTGCCATTCCCAATTTCCCTCTCGTGCCCGCATGCCAAACCGGCGCGTGA
Protein sequenceShow/hide protein sequence
MMLSLGFLQWQWTVDSVALQIAMALGHRRSFKITVHAKICNLYIKLKATLKLPSRKFQGLLKLDKLLIGVDSKSESRILVQRRRTLKSRMLSFVKRHLGRRGSKMPQYSY
LLAESENQSWHVGRLELRFVAAFGVGLAYLLALNTQIGLGNAIHPTFTSFIWVCLLLFVLWLHKWKEDRRDGEGDRTSEVSSKGRGDPLAIPNFPLVPACQTGA