CuGenDBv2

Gene ID	Lsi04G000040
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	THO complex subunit 1
Genome location	chr04:59676..60244
RNA-Seq Expression	Lsi04G000040
Synteny	Lsi04G000040
Gene Ontology terms	GO:0006406 - mRNA export from nucleus (biological process) GO:0032784 - regulation of DNA-templated transcription, elongation (biological process) GO:0000445 - THO complex part of transcription export complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0062399.1 THO complex subunit 1 [Cucumis melo var. makuwa]

1.2e-27

92.75

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAK+EEAKGAVQQV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

KGN51016.1 hypothetical protein Csa_007827 [Cucumis sativus]

5.5e-28

94.2

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAKKEEAKGAVQQV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

XP_008460496.1 PREDICTED: THO complex subunit 1 [Cucumis melo]

1.2e-27

92.75

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAK+EEAKGAVQQV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

XP_011655214.1 THO complex subunit 1 [Cucumis sativus]

5.5e-28

94.2

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAKKEEAKGAVQQV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

XP_038892206.1 THO complex subunit 1 isoform X3 [Benincasa hispida]

6.1e-27

92.75

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAKKEEAK AVQQV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTL0 Uncharacterized protein

2.7e-28

94.2

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAKKEEAKGAVQQV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

A0A1S3CC63 THO complex subunit 1

5.9e-28

92.75

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAK+EEAKGAVQQV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

A0A5A7V9M3 THO complex subunit 1

5.9e-28

92.75

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAK+EEAKGAVQQV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

A0A6J1CC37 THO complex subunit 1

6.6e-27

89.86

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV+AKYQAKPNERSKRAKKEE KG+V+QV EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

A0A6J1HPE8 THO complex subunit 1

1.9e-26

88.41

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN
        VYCWKGLRF ARQDLEGFSRFTDH IEGVVPLELLPPDV++KYQAKPNERSKRAKKEE KGAV+Q  EN
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGEN

SwissProt top hits

e value

%identity

Alignment

Q93VM9 THO complex subunit 1

6.5e-24

70.27

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGENPVEFS
        VYCWKGLRF ARQDLEGFSRFT+  IEGVVP+ELLPP+V++KYQAKPNE++KRAKKEE KG   +   N +  S
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGENPVEFS

Arabidopsis top hits

e value

%identity

Alignment

AT5G09860.1 nuclear matrix protein-related

4.6e-25

70.27

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGENPVEFS
        VYCWKGLRF ARQDLEGFSRFT+  IEGVVP+ELLPP+V++KYQAKPNE++KRAKKEE KG   +   N +  S
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGENPVEFS

AT5G09860.2 nuclear matrix protein-related

4.6e-25

70.27

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Query:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGENPVEFS
        VYCWKGLRF ARQDLEGFSRFT+  IEGVVP+ELLPP+V++KYQAKPNE++KRAKKEE KG   +   N +  S
Subjt:  VYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGENPVEFS

Sequences

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CDS sequence

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ATGGTTTATTGCTGGAAAGGCCTTCGGTTTTTAGCTCGGCAGGACTTAGAAGGATTCTCTCGATTCACCGACCATGACATTGAAGGTGTTGTGCCATTGGAACTCCTGCC
ACCTGATGTACAAGCCAAATACCAAGCCAAACCAAATGAGAGATCTAAACGTGCTAAGAAGGAAGAAGCAAAAGGGGCAGTCCAGCAAGTTGGAGAAAATCCGGTAGAGT
TCAGTTTAGATGCATTTTAG

mRNA sequence

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Protein sequence

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MVYCWKGLRFLARQDLEGFSRFTDHDIEGVVPLELLPPDVQAKYQAKPNERSKRAKKEEAKGAVQQVGENPVEFSLDAF

Lsi04G000040 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome