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Lsi04G000050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G000050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTHO complex subunit 1
Genome locationchr04:60482..60742
RNA-Seq ExpressionLsi04G000050
SyntenyLsi04G000050
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0032784 - regulation of DNA-templated transcription, elongation (biological process)
GO:0000445 - THO complex part of transcription export complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062399.1 THO complex subunit 1 [Cucumis melo var. makuwa]1.1e-3294.12Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPSAGMDVDTA+ATGN+SQGG STPEENKLSSDTDIGQEA QLEADAEVE GMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
KGN51016.1 hypothetical protein Csa_007827 [Cucumis sativus]1.1e-3294.12Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPSAGMDVDTA+ATGN+SQGG STPEENKLSSDTDIGQEA QLEADAEVE GMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
XP_038892203.1 THO complex subunit 1 isoform X1 [Benincasa hispida]1.5e-3498.82Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEA QLEADAEVETGMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
XP_038892204.1 THO complex subunit 1 isoform X2 [Benincasa hispida]1.5e-3498.82Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEA QLEADAEVETGMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
XP_038892206.1 THO complex subunit 1 isoform X3 [Benincasa hispida]1.5e-3498.82Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEA QLEADAEVETGMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
TrEMBL top hitse value%identityAlignment
A0A0A0KTL0 Uncharacterized protein5.1e-3394.12Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPSAGMDVDTA+ATGN+SQGG STPEENKLSSDTDIGQEA QLEADAEVE GMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
A0A1S3CC63 THO complex subunit 15.1e-3394.12Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPSAGMDVDTA+ATGN+SQGG STPEENKLSSDTDIGQEA QLEADAEVE GMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
A0A5A7V9M3 THO complex subunit 15.1e-3394.12Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPSAGMDVDTA+ATGN+SQGG STPEENKLSSDTDIGQEA QLEADAEVE GMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
A0A6J1CC37 THO complex subunit 15.8e-2987.06Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSD DGPSA MDVDT VA GN+SQGGT TP+ENK SSDTDIGQE+ QLEADAEVE GMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
A0A6J1G1S6 THO complex subunit 12.6e-2987.06Show/hide
Query:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
        MATPASENDGEGTRSDPDGPS  MD DT VA G++SQGGT TPEENK SSDTDIGQEA QLEADAEVE GMIDGETDAEVDLDTA
Subjt:  MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCAGCTAGTGAGAATGATGGTGAAGGAACCAGAAGTGACCCTGATGGGCCATCAGCAGGGATGGATGTCGATACAGCTGTTGCTACTGGCAATCTATCTCA
AGGTGGTACTTCAACTCCAGAAGAAAATAAACTAAGCTCTGACACGGATATTGGTCAAGAGGCAGACCAGTTGGAAGCTGATGCTGAGGTAGAAACGGGCATGATTGATG
GCGAGACAGATGCAGAGGTAGATTTGGATACTGCATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCCAGCTAGTGAGAATGATGGTGAAGGAACCAGAAGTGACCCTGATGGGCCATCAGCAGGGATGGATGTCGATACAGCTGTTGCTACTGGCAATCTATCTCA
AGGTGGTACTTCAACTCCAGAAGAAAATAAACTAAGCTCTGACACGGATATTGGTCAAGAGGCAGACCAGTTGGAAGCTGATGCTGAGGTAGAAACGGGCATGATTGATG
GCGAGACAGATGCAGAGGTAGATTTGGATACTGCATGTTGA
Protein sequenceShow/hide protein sequence
MATPASENDGEGTRSDPDGPSAGMDVDTAVATGNLSQGGTSTPEENKLSSDTDIGQEADQLEADAEVETGMIDGETDAEVDLDTAC