CuGenDBv2

Gene ID	Lsi04G000120
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Genome location	chr04:191152..191430
RNA-Seq Expression	Lsi04G000120
Synteny	Lsi04G000120
Gene Ontology terms	GO:0000413 - protein peptidyl-prolyl isomerization (biological process) GO:0006457 - protein folding (biological process) GO:0006979 - response to oxidative stress (biological process) GO:0005747 - mitochondrial respiratory chain complex I (cellular component) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
InterPro domains	IPR016488 - NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034771.1 peptidyl-prolyl cis-trans isomerase CYP22 isoform X1 [Cucumis melo var. makuwa]

1.4e-35

96.39

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQFTLFAS
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHV+DPKVF FLQFTLFAS
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQFTLFAS

KAE8648872.1 hypothetical protein Csa_008170 [Cucumis sativus]

3.1e-30

91.03

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASEIRKNSHV+DPKV   L F
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

XP_008446979.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis melo]

6.2e-31

92.31

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHV+DPKV   L F
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

XP_023552714.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo]

1.4e-30

89.74

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV T+SQ+RSTIASEIRKNSHV+DPKV   L F
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

XP_038892169.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]

6.2e-31

92.31

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHV+DPKV   L F
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRV0 Uncharacterized protein

1.5e-30

91.03

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASEIRKNSHV+DPKV   L F
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

A0A1S3BH79 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

3.0e-31

92.31

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHV+DPKV   L F
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

A0A5A7SZJ9 Peptidyl-prolyl cis-trans isomerase CYP22 isoform X1

6.9e-36

96.39

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQFTLFAS
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASEIRKNSHV+DPKVF FLQFTLFAS
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQFTLFAS

A0A6J1H232 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

5.7e-30

88.46

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDV T SQ+RSTIASEIRKNSHV+DPKV   L F
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

A0A6J1JDJ2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

9.6e-30

87.18

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Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDV T+S +RSTIASEIRKNSHV+DPKV   L F
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

SwissProt top hits

e value

%identity

Alignment

Q9LHI0 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

1.2e-21

63.16

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Query:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR N+H++DPKV   L F
Subjt:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

Arabidopsis top hits

e value

%identity

Alignment

AT3G12260.1 LYR family of Fe/S cluster biogenesis protein

8.6e-23

63.16

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Query:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF
        F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR N+H++DPKV   L F
Subjt:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQF

Sequences

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CDS sequence

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ATGGCATTCACAGTTCGAGGTCTGAAGGTTCCGCCGAACTCCGCCAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGC
AATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCAGCGACCCTAAGGTCTTCT
CGTTCCTGCAATTTACTCTATTTGCGTCTAAATTCTATATGATTTTGGGGGCGGCTTAA

mRNA sequence

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Protein sequence

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MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQFTLFASKFYMILGAA

Lsi04G000120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome