CuGenDBv2

Gene ID	Lsi04G000140
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Genome location	chr04:215016..215337
RNA-Seq Expression	Lsi04G000140
Synteny	Lsi04G000140
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0005747 - mitochondrial respiratory chain complex I (cellular component)
InterPro domains	IPR016488 - NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601118.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-25

96.72

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

XP_022957489.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata]

1.4e-25

96.72

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

XP_022985413.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima]

1.4e-25

96.72

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

XP_023552714.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo]

1.4e-25

96.72

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

XP_038892169.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]

2.8e-26

100

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BH79 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

2.0e-25

95.08

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD GAKDQG+SNFLKNFY+SNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

A0A5A7SUY5 NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 6

2.0e-25

95.08

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD GAKDQG+SNFLKNFY+SNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

A0A6J1CBT6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

2.0e-25

96.72

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVG EGLVQDLG KDQGISNFLKNFYKSNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

A0A6J1H232 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

6.8e-26

96.72

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

A0A6J1JDJ2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

6.8e-26

96.72

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGISNFLKNFYKSNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

SwissProt top hits

e value

%identity

Alignment

Q9LHI0 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

7.0e-20

77.05

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG ++FLKNFY SNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

Arabidopsis top hits

e value

%identity

Alignment

AT3G12260.1 LYR family of Fe/S cluster biogenesis protein

5.0e-21

77.05

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Query:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF
        VID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG ++FLKNFY SNYF
Subjt:  VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

Sequences

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CDS sequence

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ATGATGCTCTTTGCACTATCTTGGAGTTGGACTGCGAATGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAACGGCA
TCACATCATTGGCCAGTACGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCATATCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACT
TTTGA

mRNA sequence

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Protein sequence

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MMLFALSWSWTANVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNFYKSNYF

Lsi04G000140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome