; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G000180 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G000180
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSigma factor binding protein 1
Genome locationchr04:250903..251337
RNA-Seq ExpressionLsi04G000180
SyntenyLsi04G000180
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0006952 - defense response (biological process)
GO:0009738 - abscisic acid-activated signaling pathway (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
GO:0004672 - protein kinase activity (molecular function)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAI52954.1 sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]9.0e-6188.36Show/hide
Query:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYES
        MNVTGKKQAKRS+KSAAADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFMEL ASAASDRNL+SSAS  F DYQLLGDDDL+VAGKVETAAYES
Subjt:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYES

Query:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
        SVAALPPPDDLAVL N DASF  MFHGFW+DS TAQ E+PGL+ALL
Subjt:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4472.44Show/hide
Query:  MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASD--RNLRSSAS---FLDYQLLGDDDL------MVA
        M++T KKQ+K RS+KSAAADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIA+AAS    NL+SS S   FLDYQLLGDDDL      +VA
Subjt:  MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASD--RNLRSSAS---FLDYQLLGDDDL------MVA

Query:  GKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
        GK+ETAAY+SSVA   PP+DL V++NFDASFAEMF  F +DSS+ QTE+PG SALL
Subjt:  GKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

XP_016900221.1 PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]6.9e-4573.97Show/hide
Query:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYES
        MNVTGKKQAKRSKKS AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ AS ASD N +S  SASFLD QL+G++D++V GK E A    
Subjt:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYES

Query:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
            + P DDL  LQN D +FAEMF+GFW+DSSTAQTE+ GLSALL
Subjt:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

XP_022945563.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]1.2e-4472.44Show/hide
Query:  MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASD--RNLRSSAS---FLDYQLLGDDDL------MVA
        M++T KKQ+K RS+KSAAADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIA+AAS    NL+SS S   FLDYQLLGDDDL      +VA
Subjt:  MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASD--RNLRSSAS---FLDYQLLGDDDL------MVA

Query:  GKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
        GK+ETAAY+SSVA   PP+DL V++NFDASFAEMF  F +DSS+ QTE+PG SALL
Subjt:  GKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

XP_038892750.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]3.3e-6392.47Show/hide
Query:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYES
        MNVTGKK  KRSKKSAAA+FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNL+SSAS  FLDYQLLGDDDL+V+GKVETAAYES
Subjt:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYES

Query:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
        SVAALPP DDLAVLQNFDASFAEMFHGFWYDSSTAQT +PGLSALL
Subjt:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

TrEMBL top hitse value%identityAlignment
A0A1S4DW56 sigma factor binding protein 1, chloroplastic-like3.3e-4573.97Show/hide
Query:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYES
        MNVTGKKQAKRSKKS AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ AS ASD N +S  SASFLD QL+G++D++V GK E A    
Subjt:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYES

Query:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
            + P DDL  LQN D +FAEMF+GFW+DSSTAQTE+ GLSALL
Subjt:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

A0A5A7SVU6 Sigma factor binding protein 13.3e-4573.97Show/hide
Query:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYES
        MNVTGKKQAKRSKKS AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME+ AS ASD N +S  SASFLD QL+G++D++V GK E A    
Subjt:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRS--SASFLDYQLLGDDDLMVAGKVETAAYES

Query:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
            + P DDL  LQN D +FAEMF+GFW+DSSTAQTE+ GLSALL
Subjt:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like5.7e-4572.44Show/hide
Query:  MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASD--RNLRSSAS---FLDYQLLGDDDL------MVA
        M++T KKQ+K RS+KSAAADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIA+AAS    NL+SS S   FLDYQLLGDDDL      +VA
Subjt:  MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASD--RNLRSSAS---FLDYQLLGDDDL------MVA

Query:  GKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
        GK+ETAAY+SSVA   PP+DL V++NFDASFAEMF  F +DSS+ QTE+PG SALL
Subjt:  GKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like2.2e-4471.79Show/hide
Query:  MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASD--RNLRSSAS---FLDYQLLGDDDL------MVA
        M++T K+Q+K RS+KSAAADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELIA+AAS    NL+SS S   FLDYQLLGDDDL      +VA
Subjt:  MNVTGKKQAK-RSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASD--RNLRSSAS---FLDYQLLGDDDL------MVA

Query:  GKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
        GK+ETAAY+SSVA   PP+DL V+QNFDASFAEMF  F ++SS+ QTE+PG SALL
Subjt:  GKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

D1MWZ4 Sigma factor binding protein 14.4e-6188.36Show/hide
Query:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYES
        MNVTGKKQAKRS+KSAAADFKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFMEL ASAASDRNL+SSAS  F DYQLLGDDDL+VAGKVETAAYES
Subjt:  MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSAS--FLDYQLLGDDDLMVAGKVETAAYES

Query:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
        SVAALPPPDDLAVL N DASF  MFHGFW+DS TAQ E+PGL+ALL
Subjt:  SVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic3.0e-0632.54Show/hide
Query:  KKQAKRSKKSAAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAAL
        +K  K+ KK+ + +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+   +   + + ++ D NL   A  L  ++L  +     G+ ++  YE   A  
Subjt:  KKQAKRSKKSAAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAAL

Query:  PPPDDLAVLQNFDASFAEMFHGFWYD
           +D+ +     A F+  F   +Y+
Subjt:  PPPDDLAVLQNFDASFAEMFHGFWYD

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.7e-0456.1Show/hide
Query:  KRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        KR   +     KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  KRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 12.1e-0732.54Show/hide
Query:  KKQAKRSKKSAAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAAL
        +K  K+ KK+ + +   KV YIS+PM+V+T ASKFR LVQ+LTGQD+   +   + + ++ D NL   A  L  ++L  +     G+ ++  YE   A  
Subjt:  KKQAKRSKKSAAAD--FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAAL

Query:  PPPDDLAVLQNFDASFAEMFHGFWYD
           +D+ +     A F+  F   +Y+
Subjt:  PPPDDLAVLQNFDASFAEMFHGFWYD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAAGAAATCTGCGGCGGCCGATTTCAAAGTCGTGTACATTTCAAGTCCGATGAAGGTGAAAACCAGCGCCTCGAA
GTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGATTCCGATGCCGAGAGGTTCATGGAACTGATCGCCTCCGCTGCTAGTGATCGGAATCTTCGATCGTCAGCGTCGT
TCCTCGACTACCAACTCCTCGGCGACGACGATCTAATGGTGGCAGGAAAGGTCGAAACGGCGGCGTATGAATCGTCGGTTGCGGCTCTGCCGCCGCCGGATGATTTGGCG
GTTCTGCAGAATTTCGATGCAAGTTTTGCAGAAATGTTCCATGGCTTTTGGTATGATTCTTCTACGGCACAAACTGAGGTGCCAGGTTTAAGTGCACTGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAAGAAATCTGCGGCGGCCGATTTCAAAGTCGTGTACATTTCAAGTCCGATGAAGGTGAAAACCAGCGCCTCGAA
GTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGATTCCGATGCCGAGAGGTTCATGGAACTGATCGCCTCCGCTGCTAGTGATCGGAATCTTCGATCGTCAGCGTCGT
TCCTCGACTACCAACTCCTCGGCGACGACGATCTAATGGTGGCAGGAAAGGTCGAAACGGCGGCGTATGAATCGTCGGTTGCGGCTCTGCCGCCGCCGGATGATTTGGCG
GTTCTGCAGAATTTCGATGCAAGTTTTGCAGAAATGTTCCATGGCTTTTGGTATGATTCTTCTACGGCACAAACTGAGGTGCCAGGTTTAAGTGCACTGCTGTAG
Protein sequenceShow/hide protein sequence
MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLA
VLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL