; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi04G000260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G000260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationchr04:376678..379572
RNA-Seq ExpressionLsi04G000260
SyntenyLsi04G000260
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034761.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]2.4e-14888.09Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q PP N T DD ++R R  ++LKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-AAVAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
        S AA AAASTSNATTPRSFETTSSHQ                DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  S-AAVAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

Query:  NAFPSISHLHLESGNHNRE
        NAFPSISHLHL+SGNH+RE
Subjt:  NAFPSISHLHLESGNHNRE

KAG6601127.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]4.4e-14288.04Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGN
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCL P   PPNQ  D+ S+R R LE+LKRTQDFGFGKGDSLIGGGGN
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGN

Query:  NGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS
        +G D+QVKGDGGDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ+
Subjt:  NGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS

Query:  AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHNR
         A AAASTSNATTPRSFETTSSHQDASFKKSLPG VRAPAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLESGNH R
Subjt:  AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHNR

Query:  E
        +
Subjt:  E

XP_004142483.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]8.8e-15192.41Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q PP N T DD ++R R  ++LKRTQDFGFGKG+SLI G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH
        S AA AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+SGNH
Subjt:  S-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH

Query:  NRE
        +RE
Subjt:  NRE

XP_008446964.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]1.8e-15192.74Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q PP N T DD ++R R  ++LKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH
        S AA AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+SGNH
Subjt:  S-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH

Query:  NRE
        +RE
Subjt:  NRE

XP_038892899.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]5.0e-15493.71Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGN
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLL ATPCLPPPQ  PNQTADD ++R R LE+LKRTQDFGFGKGDSL+GG GN
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGN

Query:  NGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS
        N SDEQVKGD GDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS
Subjt:  NGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS

Query:  -AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHN
         AA AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+SGNH+
Subjt:  -AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHN

Query:  RE
        R+
Subjt:  RE

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein4.3e-15192.41Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q PP N T DD ++R R  ++LKRTQDFGFGKG+SLI G G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH
        S AA AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+SGNH
Subjt:  S-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH

Query:  NRE
        +RE
Subjt:  NRE

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 18.6e-15292.74Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q PP N T DD ++R R  ++LKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH
        S AA AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+SGNH
Subjt:  S-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH

Query:  NRE
        +RE
Subjt:  NRE

A0A5D3CCT8 Protein LATERAL ROOT PRIMORDIUM 11.2e-14888.09Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q PP N T DD ++R R  ++LKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPP-NQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGG

Query:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
        NNGSDE VKGD GDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  NNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  S-AAVAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
        S AA AAASTSNATTPRSFETTSSHQ                DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  S-AAVAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

Query:  NAFPSISHLHLESGNHNRE
        NAFPSISHLHL+SGNH+RE
Subjt:  NAFPSISHLHLESGNHNRE

A0A6J1GXY1 protein LATERAL ROOT PRIMORDIUM 1-like6.8e-14187.75Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGN
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCL P   PPNQ  D+ S+R R LE+LKRTQDFGFGKGDSLIGGGGN
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGN

Query:  NGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ-
        +G D+QVKGDGGDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ 
Subjt:  NGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ-

Query:  SAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHN
        +AA AAASTSNATTPRSFETTSSHQDASFKKSLPG V+APAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLESGNH 
Subjt:  SAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHN

Query:  RE
        R+
Subjt:  RE

A0A6J1JNR9 protein LATERAL ROOT PRIMORDIUM 1-like isoform X23.1e-14188.04Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGN
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCL P   PPNQ  D+ S+RCR LE+LKRTQDFGFGKGDSLIGGGGN
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGN

Query:  NGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS
        +G D+QVKGDGGDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ+
Subjt:  NGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS

Query:  AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHNR
        A  AAASTSNATTPRSFETTSSHQDASFKKSLPG VRAPAVF+CHRVTAISSG GEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLESGNH R
Subjt:  AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHNR

Query:  E
        +
Subjt:  E

SwissProt top hitse value%identityAlignment
K4B6C9 Protein EXPRESSION OF TERPENOIDS 13.7e-2742.16Show/hide
Query:  DFGFGKGDSLIGGGGNNGSDEQVKG------DGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD
        D G G G S  G   + G  E  +        GG G    C+DCGN+AKK+C++ RCRTCCK RG  C THVKSTWVPAA+RRERQ  +           
Subjt:  DFGFGKGDSLIGGGGNNGSDEQVKG------DGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD

Query:  GGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG
        G ++ +++   KR R   PS S+ V+    SN         T+  +   F    P  VR  AVF+C ++++I   E +LAYQA V+IGGHVFKG LYDQG
Subjt:  GGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG

Query:  ADDK
         + +
Subjt:  ADDK

O65517 Protein SHI RELATED SEQUENCE 22.2e-3249.08Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFE
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    + SG GG SGS  AG       IP +        TS+++   S  
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFE

Query:  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD
              +ASF    PG V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Subjt:  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.9e-5546.79Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADD-------GSERCRGLEHLKRTQDFGFGKGDS
        M+GLRDV  +A  P+  HQ   +IS   H +    ++AALG  VG+ PLL A          P Q  +D        + R +   +   TQ   F   + 
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADD-------GSERCRGLEHLKRTQDFGFGKGDS

Query:  LIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPR
           G  +N S     G G  G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        A+   GSS S+S+G K+PR
Subjt:  LIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPR

Query:  VL---IPSQSAAVAAASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
        ++      Q  A +  STSN T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Subjt:  VL---IPSQSAAVAAASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Query:  HLHL--ESGNHN
         LHL   + NHN
Subjt:  HLHL--ESGNHN

Q9M2U4 Protein SHI RELATED SEQUENCE 66.5e-3245.09Show/hide
Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSF
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                      SSS   ++ ++ I  QS+   +            
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSF

Query:  ETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
         TT+S Q+  F++ LPG + APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Subjt:  ETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Q9SD40 Protein SHI RELATED SEQUENCE 15.7e-2841.05Show/hide
Query:  GDSLIGGGGNNGSDEQVK--GDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAG
        G++   G G   +   ++  G GG      C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPAA+RRERQ  +      T    G S       
Subjt:  GDSLIGGGGNNGSDEQVK--GDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAG

Query:  AKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG
         KR R  +P+ S+++                  SH       + P  V + AVFRC RV+++  GE E AYQ  V+IGGH+FKG LYD G
Subjt:  AKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG

Arabidopsis top hitse value%identityAlignment
AT3G54430.1 SHI-related sequence 64.6e-3345.09Show/hide
Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSF
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                      SSS   ++ ++ I  QS+   +            
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSF

Query:  ETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
         TT+S Q+  F++ LPG + APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Subjt:  ETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

AT4G36260.1 Lateral root primordium (LRP) protein-related1.6e-3349.08Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFE
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    + SG GG SGS  AG       IP +        TS+++   S  
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFE

Query:  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD
              +ASF    PG V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Subjt:  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD

AT5G12330.1 Lateral root primordium (LRP) protein-related1.3e-5646.79Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADD-------GSERCRGLEHLKRTQDFGFGKGDS
        M+GLRDV  +A  P+  HQ   +IS   H +    ++AALG  VG+ PLL A          P Q  +D        + R +   +   TQ   F   + 
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADD-------GSERCRGLEHLKRTQDFGFGKGDS

Query:  LIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPR
           G  +N S     G G  G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        A+   GSS S+S+G K+PR
Subjt:  LIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPR

Query:  VL---IPSQSAAVAAASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
        ++      Q  A +  STSN T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Subjt:  VL---IPSQSAAVAAASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Query:  HLHL--ESGNHN
         LHL   + NHN
Subjt:  HLHL--ESGNHN

AT5G12330.2 Lateral root primordium (LRP) protein-related1.3e-5646.79Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADD-------GSERCRGLEHLKRTQDFGFGKGDS
        M+GLRDV  +A  P+  HQ   +IS   H +    ++AALG  VG+ PLL A          P Q  +D        + R +   +   TQ   F   + 
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADD-------GSERCRGLEHLKRTQDFGFGKGDS

Query:  LIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPR
           G  +N S     G G  G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        A+   GSS S+S+G K+PR
Subjt:  LIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPR

Query:  VL---IPSQSAAVAAASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
        ++      Q  A +  STSN T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Subjt:  VL---IPSQSAAVAAASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Query:  HLHL--ESGNHN
         LHL   + NHN
Subjt:  HLHL--ESGNHN

AT5G12330.4 Lateral root primordium (LRP) protein-related1.3e-5646.79Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADD-------GSERCRGLEHLKRTQDFGFGKGDS
        M+GLRDV  +A  P+  HQ   +IS   H +    ++AALG  VG+ PLL A          P Q  +D        + R +   +   TQ   F   + 
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADD-------GSERCRGLEHLKRTQDFGFGKGDS

Query:  LIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPR
           G  +N S     G G  G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        A+   GSS S+S+G K+PR
Subjt:  LIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPR

Query:  VL---IPSQSAAVAAASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS
        ++      Q  A +  STSN T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Subjt:  VL---IPSQSAAVAAASTSNATTPRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS

Query:  HLHL--ESGNHN
         LHL   + NHN
Subjt:  HLHL--ESGNHN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACGCCTTCTTCTCTTCACCAACAGACCCAAATCATTTCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTC
CGCCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCGCCACAGGCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTT
GTCGGGGTTTGGAACATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCGTTGATCGGCGGTGGAGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGAC
GGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTC
TACGCACGTGAAGAGCACGTGGGTGCCGGCGGCTCGGCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCACTGCTAGTGGCGACGGAGGGTCTTCTGGTT
CTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCCGCCGTCGCCGCCGCTTCCACTTCTAATGCCACCACTCCCCGGAGCTTTGAAACAACC
TCTAGCCATCAAGATGCAAGCTTCAAGAAGTCGTTGCCGGGGCATGTTCGGGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTT
AGCTTACCAAGCAACAGTCAACATTGGGGGTCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGG
AAAGTGGTAACCACAACAGGGAATAG
mRNA sequenceShow/hide mRNA sequence
AGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAAAATGAGAGAGATAGGTGAAGTGGCGTCTCCTTTTGAAATCAAAATACAGAATTTTGAGTCGGCATAGCCATTATTTAT
AGTTATTCCCTTCTTCTCAAGCTAAAACAACTTTGACACTGCAGAGTTTGAAGAATCATTCATTCCACTCACCCCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTT
CTCCTTCTTCCTTCTTCCTTCTCTCTCTCGCTCTCTCTCTTTCTTTCTCTTTCTCCTCTGTTACTGTGAAATGAGAGAGAATTCCATTCCATTAACACAGCTACAGAATT
GCTTTTGGTAACACAAACAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACGCCTTCTTCTCTTCACCAACAGACCCAAATCATTTCTTCCGATCATCATCCAT
CTCTTCCTCTGCCGTCCTCCGCCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCGCCACAGGCCCCGCCCAATCAGACGGCT
GACGATGGTAGCGAGCGTTGTCGGGGTTTGGAACATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCGTTGATCGGCGGTGGAGGAAATAATGGCTCCGA
CGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGG
GACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCGGCGGCTCGGCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCACTGCTAGTGGC
GACGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCCGCCGTCGCCGCCGCTTCCACTTCTAATGCCACCACTCC
CCGGAGCTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCGTTGCCGGGGCATGTTCGGGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTA
GCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGGGGTCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCT
ATTTCACACCTCCATTTGGAAAGTGGTAACCACAACAGGGAATAGACATTCCTTCTCTTCGTTCTTCTCCAATTCTCCCTCTGTCACTCTCCTCCTCCTCCCGAAAACTT
GGTCTCGGCCGCTCGAGAAAATATGATATCTCTGCTAGATTTCAGTGGTCTGTTATGCTATCTATAAGTTCTATATAGTTGTTATCACGGTGGTAATGCAATGAATGTTG
CACTAAATAGAACACAAAAGTGCATAGTTGTAATAGGATTTTTCTGTTCTATAGTCCTTCTAGTCTTAAGCTAAGTTTAGTGTAAGATCTCAAGTTCAATGATAGTTGGA
TACCGATCATCTGTATATTGCTAAGATGTGTAACTTTCATCCATCCGAATATCTGCTGAAGCAAGCTAGCTTTTCCTATCTCATAGCAGCTGTATTATATGTTGGAATAC
AAGAGTTTAAAATCTCTTCTTTGACTGTCTATCTCGAAAAGTTTTTATGAAACGAATGAAATCGTTCGTCTTCGAAAATAGAACATCGGGCATCTTCCTGTGAGAGGCCA
CCATGATGGAACAGGCAAAATGTATGTAATGCCTTCCTCTTTCTACATTACTATCATTTGTCTTCATCTTAGAACATTTTCACTGATTTGGATCTTCTCCAATTATGAGA
GGGCTTCATTAAATGGAAGTCATTTATTTGATTGAGACGACTTCGATGGTGAATATGTAGCGAGAACCCGAATAAGTAAAATCAGACCCCACATGAACGATATAAGTAGA
AGATGAAAGTAACTGAACTGTAGTTCCATTTCATCACATTTTTAGCAAAAGAAAGCAGGGCAATGGAGAAGAGGAAAACAGTGTAACAATTACCA
Protein sequenceShow/hide protein sequence
MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVKGD
GGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETT
SSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHNRE