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Lsi04G000370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi04G000370
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUroporphyrinogen decarboxylase
Genome locationchr04:527026..528438
RNA-Seq ExpressionLsi04G000370
SyntenyLsi04G000370
Gene Ontology termsGO:0042254 - ribosome biogenesis (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR006169 - GTP1/OBG domain
IPR036726 - GTP1/OBG domain superfamily
IPR045086 - OBG-type GTPase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34199.1 mitochondrial GTPase [Cucumis melo subsp. melo]7.0e-3489.02Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK+VL LRGLRES SCPWLFSAISYYSD P KKSKLAPLQERRMIDRFKVYAKGGDGGNGC SMRRSRHER+G PDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
XP_004142409.1 probable GTP-binding protein OBGM, mitochondrial [Cucumis sativus]1.7e-3591.46Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK+VLHLRGLRES SCPWLFSAISYYSD P KKSKLAPLQERRMIDRFKVYAKGGDGGNGC SMRRSRHERHG PDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
XP_008446933.1 PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X1 [Cucumis melo]7.0e-3489.02Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK+VL LRGLRES SCPWLFSAISYYSD P KKSKLAPLQERRMIDRFKVYAKGGDGGNGC SMRRSRHER+G PDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
XP_008446934.1 PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Cucumis melo]7.0e-3489.02Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK+VL LRGLRES SCPWLFSAISYYSD P KKSKLAPLQERRMIDRFKVYAKGGDGGNGC SMRRSRHER+G PDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
XP_022151583.1 probable GTP-binding protein OBGM, mitochondrial [Momordica charantia]4.1e-3489.02Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK VL L+GLRES S PWLFSAISYYSD PSKKSKLAPLQERRM+DRFKVYAKGGDGGNGCHSMRRSRH+RHGQPDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
TrEMBL top hitse value%identityAlignment
A0A0A0KWW4 Uncharacterized protein8.1e-3691.46Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK+VLHLRGLRES SCPWLFSAISYYSD P KKSKLAPLQERRMIDRFKVYAKGGDGGNGC SMRRSRHERHG PDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
A0A1S3BG88 probable GTP-binding protein OBGM, mitochondrial isoform X13.4e-3489.02Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK+VL LRGLRES SCPWLFSAISYYSD P KKSKLAPLQERRMIDRFKVYAKGGDGGNGC SMRRSRHER+G PDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
A0A5D3CBS7 Putative GTP-binding protein OBGM3.4e-3489.02Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK+VL LRGLRES SCPWLFSAISYYSD P KKSKLAPLQERRMIDRFKVYAKGGDGGNGC SMRRSRHER+G PDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
A0A6J1DCJ9 probable GTP-binding protein OBGM, mitochondrial2.0e-3489.02Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK VL L+GLRES S PWLFSAISYYSD PSKKSKLAPLQERRM+DRFKVYAKGGDGGNGCHSMRRSRH+RHGQPDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
E5GCK2 Mitochondrial GTPase3.4e-3489.02Show/hide
Query:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        MRF CVK+VL LRGLRES SCPWLFSAISYYSD P KKSKLAPLQERRMIDRFKVYAKGGDGGNGC SMRRSRHER+G PDG
Subjt:  MRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
SwissProt top hitse value%identityAlignment
F4HSD4 Probable GTP-binding protein OBGM, mitochondrial5.3e-1651.35Show/hide
Query:  VLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        V +L   +     PW+ + + +YSD   KK K+APLQE RM DRF +YA+GG+GG+GC S+RRSR +R+G+PDG
Subjt:  VLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
Q2QZ37 Probable GTP-binding protein OBGM, mitochondrial6.0e-1262.96Show/hide
Query:  YYSDIP-SKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        YY+  P  +K K APLQ R M+DRF++ AKGGDGGNGC S+RRSR +R G+PDG
Subjt:  YYSDIP-SKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
Arabidopsis top hitse value%identityAlignment
AT1G07615.1 GTP-binding protein Obg/CgtA3.7e-1751.35Show/hide
Query:  VLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG
        V +L   +     PW+ + + +YSD   KK K+APLQE RM DRF +YA+GG+GG+GC S+RRSR +R+G+PDG
Subjt:  VLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYAKGGDGGNGCHSMRRSRHERHGQPDG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGATGGTGATGAACTTACCATAAATGAAAACAAAAAGAAAATTGTTTACAGCAAAGAAACACACCGGCCTTCATATTCCGCCGCCAGCCTGCTGCCACTGCTCGCCGT
CGACCGTTTTACATCGCCGACTACCATCCGGGCAAGAACAGGGAGAAATATGAGGTTTTCGTGTGTAAAACAAGTTCTACATTTGAGAGGCTTGAGAGAATCCTTAAGTT
GCCCATGGCTTTTTTCTGCCATTTCTTACTACTCAGATATTCCCTCAAAGAAGTCTAAGCTTGCCCCTTTACAGGAGAGGAGAATGATAGACAGGTTTAAGGTGTACGCT
AAAGGAGGTGATGGTGGAAATGGTTGCCATAGCATGCGGCGTAGTAGGCACGAACGCCACGGCCAACCTGATGGTACTTTTTATATGTCTAATTAA
mRNA sequenceShow/hide mRNA sequence
AATGATGGTGATGAACTTACCATAAATGAAAACAAAAAGAAAATTGTTTACAGCAAAGAAACACACCGGCCTTCATATTCCGCCGCCAGCCTGCTGCCACTGCTCGCCGT
CGACCGTTTTACATCGCCGACTACCATCCGGGCAAGAACAGGGAGAAATATGAGGTTTTCGTGTGTAAAACAAGTTCTACATTTGAGAGGCTTGAGAGAATCCTTAAGTT
GCCCATGGCTTTTTTCTGCCATTTCTTACTACTCAGATATTCCCTCAAAGAAGTCTAAGCTTGCCCCTTTACAGGAGAGGAGAATGATAGACAGGTTTAAGGTGTACGCT
AAAGGAGGTGATGGTGGAAATGGTTGCCATAGCATGCGGCGTAGTAGGCACGAACGCCACGGCCAACCTGATGGTACTTTTTATATGTCTAATTAA
Protein sequenceShow/hide protein sequence
NDGDELTINENKKKIVYSKETHRPSYSAASLLPLLAVDRFTSPTTIRARTGRNMRFSCVKQVLHLRGLRESLSCPWLFSAISYYSDIPSKKSKLAPLQERRMIDRFKVYA
KGGDGGNGCHSMRRSRHERHGQPDGTFYMSN